View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15637_high_6 (Length: 440)

Name: NF15637_high_6
Description: NF15637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15637_high_6
NF15637_high_6
[»] chr2 (16 HSPs)
chr2 (33-401)||(6915171-6915539)
chr2 (150-248)||(10543505-10543603)
chr2 (150-248)||(10471307-10471405)
chr2 (150-248)||(28106207-28106305)
chr2 (168-248)||(27966389-27966469)
chr2 (261-317)||(10492777-10492833)
chr2 (260-312)||(28105350-28105402)
chr2 (254-317)||(10463585-10463648)
chr2 (254-301)||(10507349-10507396)
chr2 (266-317)||(10860707-10860758)
chr2 (255-317)||(10474161-10474223)
chr2 (150-248)||(10859023-10859121)
chr2 (261-317)||(7476566-7476622)
chr2 (266-317)||(10848803-10848854)
chr2 (260-317)||(7478731-7478788)
chr2 (169-230)||(9081352-9081413)
[»] chr7 (5 HSPs)
chr7 (150-248)||(15044800-15044898)
chr7 (250-321)||(15045570-15045641)
chr7 (63-129)||(15043971-15044037)
chr7 (348-401)||(15047553-15047606)
chr7 (33-65)||(15043822-15043854)
[»] chr8 (1 HSPs)
chr8 (265-316)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 33 - 401
Target Start/End: Complemental strand, 6915539 - 6915171
Alignment:
Q  33 tcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccattgg 132  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||    
T  6915539 tcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgg 6915440  T
Q  133 gacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccg 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  6915439 gacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccag 6915340  T
Q  233 aagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6915339 aagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagca 6915240  T
Q  333 gctgaaatgttctcatcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 401  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915239 gctgaaatgttctcatcatcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  150 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccgaagtggttgtaccccc 248  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||  |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  150 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccgaagtggttgtaccccc 248  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||  |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  150 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccgaagtggttgtaccccc 248  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||  |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  168 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccgaagtggttgtaccccc 248  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||  |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  261 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  260 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 312  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  254 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  254 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 301  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  266 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  255 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  150 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccgaagtggttgtaccccc 248  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||  |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  261 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  266 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  260 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 317  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 9081413 - 9081352
Alignment:
Q  169 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcc 230  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| ||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcc 9081352  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  150 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcccgaagtggttgtaccccc 248  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| |||||||||| |||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  250 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 321  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 15043971 - 15044037
Alignment:
Q  63 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccat 129  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccat 15044037  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  348 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 401  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 15043822 - 15043854
Alignment:
Q  33 tcacccttccgaatgacgccctcataaactctt 65  Q
    |||||||||||||||||||||||||||| ||||    
T  15043822 tcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  265 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 316  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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