View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15638_high_2 (Length: 256)

Name: NF15638_high_2
Description: NF15638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15638_high_2
NF15638_high_2
[»] chr1 (8 HSPs)
chr1 (1-248)||(45758578-45758825)
chr1 (1-108)||(39134644-39134751)
chr1 (4-108)||(5533400-5533501)
chr1 (1-111)||(38853606-38853716)
chr1 (5-108)||(6221765-6221865)
chr1 (42-110)||(43235690-43235758)
chr1 (47-108)||(38546960-38547021)
chr1 (47-92)||(10925894-10925939)
[»] chr5 (23 HSPs)
chr5 (1-106)||(33037853-33037958)
chr5 (1-111)||(10407534-10407642)
chr5 (44-108)||(27530608-27530672)
chr5 (1-111)||(11242238-11242345)
chr5 (42-108)||(26718871-26718937)
chr5 (42-108)||(26988615-26988681)
chr5 (1-108)||(35080694-35080797)
chr5 (1-107)||(40794249-40794354)
chr5 (42-82)||(2530846-2530886)
chr5 (1-111)||(22648657-22648763)
chr5 (1-91)||(34425976-34426064)
chr5 (3-86)||(1366470-1366551)
chr5 (42-108)||(24395850-24395916)
chr5 (42-87)||(10543784-10543829)
chr5 (1-32)||(606227-606258)
chr5 (1-32)||(27530556-27530587)
chr5 (1-31)||(2412161-2412191)
chr5 (1-31)||(14318382-14318412)
chr5 (50-103)||(2412204-2412257)
chr5 (47-108)||(14317971-14318032)
chr5 (51-92)||(22875060-22875101)
chr5 (4-32)||(2024638-2024666)
chr5 (44-92)||(15639760-15639807)
[»] chr4 (16 HSPs)
chr4 (1-111)||(30507040-30507151)
chr4 (1-107)||(39329317-39329421)
chr4 (47-106)||(40217352-40217411)
chr4 (42-108)||(4167846-4167912)
chr4 (42-108)||(11906826-11906892)
chr4 (4-92)||(5893092-5893179)
chr4 (1-108)||(24614031-24614137)
chr4 (1-108)||(27112108-27112212)
chr4 (1-108)||(36118383-36118487)
chr4 (1-111)||(39655174-39655283)
chr4 (1-103)||(52468364-52468463)
chr4 (5-108)||(10041923-10042025)
chr4 (53-108)||(51691844-51691899)
chr4 (1-111)||(24397012-24397121)
chr4 (42-115)||(37744820-37744893)
chr4 (1-103)||(36362798-36362900)
[»] chr7 (16 HSPs)
chr7 (1-111)||(2611182-2611291)
chr7 (1-108)||(12419419-12419524)
chr7 (44-108)||(12981438-12981502)
chr7 (42-108)||(23020409-23020474)
chr7 (42-114)||(38971364-38971436)
chr7 (1-108)||(23744869-23744974)
chr7 (1-107)||(6765609-6765710)
chr7 (48-111)||(26917652-26917715)
chr7 (1-108)||(23859146-23859251)
chr7 (4-108)||(7398527-7398632)
chr7 (48-92)||(9014119-9014163)
chr7 (1-108)||(18201210-18201313)
chr7 (1-108)||(21763513-21763616)
chr7 (1-32)||(27237421-27237452)
chr7 (42-92)||(9014709-9014759)
chr7 (2-30)||(36902924-36902952)
[»] chr2 (17 HSPs)
chr2 (1-111)||(16097080-16097188)
chr2 (1-107)||(21665627-21665730)
chr2 (50-104)||(12133965-12134019)
chr2 (1-111)||(24035467-24035575)
chr2 (42-111)||(37182755-37182824)
chr2 (47-107)||(7742055-7742115)
chr2 (42-108)||(28425632-28425698)
chr2 (47-108)||(11952514-11952575)
chr2 (46-107)||(12694794-12694855)
chr2 (42-114)||(42029260-42029332)
chr2 (2-91)||(44914846-44914932)
chr2 (1-82)||(13800495-13800574)
chr2 (1-106)||(22727384-22727487)
chr2 (1-111)||(38400870-38400978)
chr2 (47-108)||(16227291-16227351)
chr2 (1-31)||(11952588-11952618)
chr2 (1-31)||(42029217-42029247)
[»] chr8 (20 HSPs)
chr8 (42-111)||(5942779-5942848)
chr8 (1-108)||(7944447-7944552)
chr8 (1-110)||(15167336-15167445)
chr8 (1-106)||(30674330-30674433)
chr8 (44-111)||(34048630-34048697)
chr8 (1-102)||(5973038-5973137)
chr8 (47-108)||(38009076-38009137)
chr8 (47-108)||(39332333-39332394)
chr8 (42-109)||(14509904-14509971)
chr8 (4-107)||(41677098-41677200)
chr8 (1-110)||(15078831-15078938)
chr8 (44-108)||(11290303-11290367)
chr8 (47-115)||(29364468-29364536)
chr8 (1-101)||(34868108-34868207)
chr8 (1-32)||(8646278-8646309)
chr8 (42-89)||(34789806-34789853)
chr8 (1-31)||(9108566-9108596)
chr8 (42-108)||(34812682-34812748)
chr8 (1-82)||(8102985-8103066)
chr8 (55-108)||(38843420-38843473)
[»] scaffold1590 (1 HSPs)
scaffold1590 (1-98)||(193-288)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-108)||(230786-230889)
[»] scaffold0902 (1 HSPs)
scaffold0902 (4-94)||(4402-4490)
[»] chr6 (4 HSPs)
chr6 (47-111)||(20611908-20611972)
chr6 (1-108)||(2477510-2477614)
chr6 (42-108)||(27994870-27994936)
chr6 (47-111)||(27131121-27131185)
[»] scaffold0097 (1 HSPs)
scaffold0097 (47-110)||(39045-39108)
[»] chr3 (9 HSPs)
chr3 (1-92)||(25855497-25855586)
chr3 (41-108)||(36179482-36179549)
chr3 (42-108)||(23641242-23641308)
chr3 (42-115)||(54574741-54574814)
chr3 (1-108)||(49393165-49393269)
chr3 (50-108)||(52973437-52973495)
chr3 (43-92)||(32319098-32319147)
chr3 (1-32)||(26279618-26279649)
chr3 (4-32)||(52374735-52374763)
[»] scaffold1320 (1 HSPs)
scaffold1320 (1-110)||(1427-1534)
[»] scaffold0012 (2 HSPs)
scaffold0012 (51-108)||(182436-182493)
scaffold0012 (42-107)||(206417-206480)
[»] scaffold0022 (2 HSPs)
scaffold0022 (4-82)||(40163-40240)
scaffold0022 (4-82)||(138223-138300)
[»] scaffold0182 (1 HSPs)
scaffold0182 (53-108)||(23925-23980)
[»] scaffold0003 (1 HSPs)
scaffold0003 (44-92)||(351276-351324)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 45758578 - 45758825
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  45758578 tttaaaaaatttaaatagaacattgttcttttaaaaaaaatatacatttttattttatttcggacctcttttcacttacagagccgagcctctggattcg 45758677  T
Q  101 taggaacgaccatgcgtaagatatttacgttatcaaaacaaacagatggactgcaagcatataccaagtttagttttttatattgtgtgagaaatatcat 200  Q
    |||||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45758678 taggaacggccatgcgtaagttatttacgttatcaaaacaaatggatggactgcaagcatataccaagtttagttttttatattgtgtgagaaatatcat 45758777  T
Q  201 agagtgttgatgtagttagaatttagccaagttattgattgatgatgt 248  Q
     |||||||||||||||||||||||||||||||||||||||||||||||    
T  45758778 cgagtgttgatgtagttagaatttagccaagttattgattgatgatgt 45758825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39134751 - 39134644
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| |||||||||||||||| | |||||||||||||| || ||||||||| |||||||    
T  39134751 tttaaaaaatttaaatagaacattgttcttttaaaaaaaaaatacgtttttattttattacgagtctcttttcacttacggagccgagcctccggattcg 39134652  T
Q  101 taggaacg 108  Q
    ||||||||    
T  39134651 taggaacg 39134644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 5533400 - 5533501
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtag 103  Q
    ||||||||||||||||| |||||||||||         ||||||||||||||||||||||| |||||||||||||||||  | |||||| ||||||||||    
T  5533400 aaaaaatttaaatagaatattgttcttttaaaaaa---atacatttttattttattacgggtctcttttcacttacagagtcaagcctccggattcgtag 5533496  T
Q  104 gaacg 108  Q
     ||||    
T  5533497 aaacg 5533501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 38853606 - 38853716
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||| |||||||||         ||||||||||||||||||| | ||||| ||||||||| ||| ||||| |||||  ||||    
T  38853606 tttaaaaaatttaaatagaacactgttcttttaaaaaaaaaatacatttttattttattatgtgcctcatttcacttatagagccgagtctctgatttcg 38853705  T
Q  101 taggaacgacc 111  Q
    ||| |||||||    
T  38853706 tagaaacgacc 38853716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 6221765 - 6221865
Alignment:
Q  5 aaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtagg 104  Q
    |||||||||||||||||||||||||||          ||| ||||||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||     
T  6221765 aaaaatttaaatagaacattgttctttaaaaaaa---ataaatttttattttattacgggtctcttttcatttacagaaccgagtctccagattcgtaga 6221861  T
Q  105 aacg 108  Q
    ||||    
T  6221862 aacg 6221865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 43235758 - 43235690
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgac 110  Q
    |||||||||||||||||||| |||||||||||||||||| |  ||||  |  |||||||||||||||||    
T  43235758 atacatttttattttattacaggcctcttttcacttacaaagtcgagtattcggattcgtaggaacgac 43235690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 38547021 - 38546960
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||||||| |||||||||| |||| |||| ||||   |||||||||||||    
T  38547021 tttttattttattacgggccccttttcacttgcagagccgatcctccaaattcgtaggaacg 38546960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 10925939 - 10925894
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||    
T  10925939 tttttattttattacgggcttcttttcacttagagagtcgagcctc 10925894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33037853 - 33037958
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||| ||||||||||||||        |||||||||||||||||||||| ||||||||||  ||||||| ||||||||||| |||||    
T  33037853 tttaaaaaatttaaataaaacattgttcttttaaaaaatatatacatttttattttattacgagcctcttttcggttacagagccgagcctctgaattcg 33037952  T
Q  101 taggaa 106  Q
    ||||||    
T  33037953 taggaa 33037958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10407534 - 10407642
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| |||||||||||||| || |||||||||||||| |||||||| ||||| ||||||    
T  10407534 tttaaaaaatttaaatagaacattgttcttttaaaaaaa--atacttttttattttattatggacctcttttcacttatagaaccgaacctctagattcg 10407631  T
Q  101 taggaacgacc 111  Q
    |||||||||||    
T  10407632 taggaacgacc 10407642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 27530608 - 27530672
Alignment:
Q  44 acatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  27530608 acatttttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacg 27530672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11242345 - 11242238
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||| ||||||||||||||||||||||         |||| |||||||||||||||| | ||||||||||||||||| ||||||||| ||||||     
T  11242345 tttaaaaaaattaaatagaacattgttcttttaaaaga---atacgtttttattttattacgagtctcttttcacttacagagccgagcctccggattca 11242249  T
Q  101 taggaacgacc 111  Q
    |||||||||||    
T  11242248 taggaacgacc 11242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 26718937 - 26718871
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  26718937 atacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacg 26718871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 26988681 - 26988615
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  26988681 atacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacg 26988615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35080797 - 35080694
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||| ||||||||||||||         | | |||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||    
T  35080797 tttaaaaaatttaaataaaacattgttcttttaaaaa----aaatatttttattttattacggccctcttttcacttacagagtcgagcctctagattcg 35080702  T
Q  101 taggaacg 108  Q
    ||||||||    
T  35080701 taggaacg 35080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40794354 - 40794249
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||| ||||||||||||||         | || |||||||||||||||| ||||||||||||||||||| ||||||||| | |||||    
T  40794354 tttaaaaaatttaaataaaacattgttcttttaaaaaaaaaa-acgtttttattttattacgagcctcttttcacttacagagccgagcctccgaattcg 40794256  T
Q  101 taggaac 107  Q
    || ||||    
T  40794255 tatgaac 40794249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 2530886 - 2530846
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacaga 82  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2530886 atacatttttattttattacgggcctcttttcacttacaga 2530846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22648763 - 22648657
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttatttt-attacgggcctcttttcacttacagaaccgagcctctggattc 99  Q
    ||||||||||||||||||||||||||||||          |||||||||||||||| ||||| ||| ||||||||||||||| | |||| ||| ||||||    
T  22648763 tttaaaaaatttaaatagaacattgttctt----aaaaaatatacatttttatttttattacaggcttcttttcacttacag-agcgagtctccggattc 22648669  T
Q  100 gtaggaacgacc 111  Q
    ||||||||||||    
T  22648668 gtaggaacgacc 22648657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34425976 - 34426064
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcct 91  Q
    ||||||||||| ||||||||||||||||||||         ||||||||||||||||||||  | || |||||||||||||||||||||||    
T  34425976 tttaaaaaattgaaatagaacattgttcttttaaaaaag--atacatttttattttattacatgtcttttttcacttacagaaccgagcct 34426064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 1366551 - 1366470
Alignment:
Q  3 taaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccg 86  Q
    ||||||||||||||||||||||||||||||         |||| |||||||||| |||||| |||||||| |||||||||||||    
T  1366551 taaaaaatttaaatagaacattgttcttttaaaaaaa--atacgtttttatttttttacggacctctttttacttacagaaccg 1366470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 24395850 - 24395916
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||||||||||  |||||| | ||||||| |||  |||| |||||||||||||||    
T  24395850 atacatttttattttattacgggtttctttttatttacagagccgtacctccggattcgtaggaacg 24395916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10543784 - 10543829
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccga 87  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  10543784 atacatttttattttattacggatctcttttcacttatagaaccga 10543829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 606227 - 606258
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttctttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  606227 tttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 27530556 - 27530587
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttctttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  27530556 tttaaaaaatttaaatagaacattgttctttt 27530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2412161 - 2412191
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttt 31  Q
    |||||||||||||||||||||||||||||||    
T  2412161 tttaaaaaatttaaatagaacattgttcttt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 14318412 - 14318382
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttt 31  Q
    |||||||||||||||||||||||||||||||    
T  14318412 tttaaaaaatttaaatagaacattgttcttt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 2412204 - 2412257
Alignment:
Q  50 ttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtag 103  Q
    |||||||||||||| |||||||||||||||||| ||  ||||| | ||||||||    
T  2412204 ttattttattacggacctcttttcacttacagagccttgcctccgaattcgtag 2412257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 14318032 - 14317971
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||| ||||||  | |||||||||| ||||||||||||| | ||||||| |||||    
T  14318032 tttttattttaatacgggtatattttcacttatagaaccgagcctccgaattcgtaagaacg 14317971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 22875060 - 22875101
Alignment:
Q  51 tattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    ||||||||||| |  |||||||||||||||||||||||||||    
T  22875060 tattttattactgttctcttttcacttacagaaccgagcctc 22875101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 2024666 - 2024638
Alignment:
Q  4 aaaaaatttaaatagaacattgttctttt 32  Q
    |||||||||||||||||||||||||||||    
T  2024666 aaaaaatttaaatagaacattgttctttt 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 15639760 - 15639807
Alignment:
Q  44 acatttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    |||||||||||| ||||||||| | |||||||||| |||||||||||||    
T  15639760 acatttttattt-attacgggcttattttcacttatagaaccgagcctc 15639807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30507151 - 30507040
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnnta-tacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattc 99  Q
    ||||||||||||||||||||||||||||||||         | |||||||||||||||||| ||| ||||||||||||||| || |||||||| ||||||    
T  30507151 tttaaaaaatttaaatagaacattgttcttttaaaaaaaaaaatacatttttattttattatgggtctcttttcacttacaaaatcgagcctccggattc 30507052  T
Q  100 gtaggaacgacc 111  Q
    ||||||||||||    
T  30507051 gtaggaacgacc 30507040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39329421 - 39329317
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||| ||||||||||||||||        |||   ||||||||||||||||| ||||||||||||||||||||||||||||   |||||    
T  39329421 tttaaaaaatttaaagagaacattgttcttttaaaaaaaatatg--tttttattttattacggacctcttttcacttacagaaccgagcctccaaattcg 39329324  T
Q  101 taggaac 107  Q
    |||||||    
T  39329323 taggaac 39329317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 40217352 - 40217411
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaa 106  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  40217352 tttttattttattacgagcctcttttcacttacaaaaccgagcctctgaattcgtaggaa 40217411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 4167912 - 4167846
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |||||    
T  4167912 atacgtttttattttattacgggcctcttttcacttacaaaatcgagcctccggattcgtacgaacg 4167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 11906892 - 11906826
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||||| | |||||||||||||    
T  11906892 atacatttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacg 11906826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 5893092 - 5893179
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    |||||| ||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  5893092 aaaaaagttaaatagaacattgttcttttaaaaaaaa-atacatttttattttattacggacctcttttcacttacagagccgagcctc 5893179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24614031 - 24614137
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||| | || ||||  ||||||    
T  24614031 tttaaaaaatttaaatagaacattgttctttaaaaaaaaaaatacatttt-attttattacgggcctcttttcacttacagagctgaacctccagattcg 24614129  T
Q  101 taggaacg 108  Q
    || |||||    
T  24614130 taagaacg 24614137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27112108 - 27112212
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||| ||||||||||| |||         ||||| | ||||||||||||||| |||||||||||||||||||||||||||  |||| |    
T  27112108 tttaaaaaatttaaattgaacattgttcgtttaaaaaa---atacaatcttattttattacgggtctcttttcacttacagaaccgagcctccagatttg 27112204  T
Q  101 taggaacg 108  Q
    ||||||||    
T  27112205 taggaacg 27112212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36118487 - 36118383
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||||||||| |||         |||| |||||||||||||||| ||||||||||||||||| | |||||| || | |||||    
T  36118487 tttaaaaaatttaaatagaacattgttcatttaaaaaa---atacgtttttattttattacgagcctcttttcacttacaaagccgagcttccgaattcg 36118391  T
Q  101 taggaacg 108  Q
    ||||||||    
T  36118390 taggaacg 36118383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39655283 - 39655174
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         | || |||||||||||||||| |||||||||||| ||||||  ||||||||  |||| |    
T  39655283 tttaaaaaatttaaatagaacattgttctttttaaaaataga-acgtttttattttattacgagcctcttttcacctacagagtcgagcctccagatttg 39655185  T
Q  101 taggaacgacc 111  Q
    |||||||||||    
T  39655184 taggaacgacc 39655174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 52468364 - 52468463
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| ||||||||||||||| | ||||||||||| |||||| ||||||||| | |||||    
T  52468364 tttaaaaaatttaaatagaacattgttcttttaaaaaa---atacgtttttattttattacagacctcttttcacctacagagccgagcctccgaattcg 52468460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 10042025 - 10041923
Alignment:
Q  5 aaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtagg 104  Q
    ||||||||||||||||||||||||||||         ||||  |||||||||| ||||| |||||||||||||||||||| || ||||  ||||||||||    
T  10042025 aaaaatttaaatagaacattgttcttttaaaaaaaa-atacgcttttattttactacggacctcttttcacttacagaactgaacctcccgattcgtagg 10041927  T
Q  105 aacg 108  Q
    ||||    
T  10041926 aacg 10041923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 51691899 - 51691844
Alignment:
Q  53 ttttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||    
T  51691899 ttttattacgagcctcttttcacttgcagagccgagcctccggattcgtaggaacg 51691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24397012 - 24397121
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||| || |||||||||||         |||| |||||||||||||||  | ||||||||||||||||| | ||||||||||||| |    
T  24397012 tttaaaaaatttaaataaaatattgttcttttaaaaaaaa-atacgtttttattttattacatgtctcttttcacttacagagctgagcctctggatttg 24397110  T
Q  101 taggaacgacc 111  Q
    || | ||||||    
T  24397111 taagtacgacc 24397121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 37744893 - 37744820
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgaccatgc 115  Q
    |||| ||||||||||| |||||||||||||||| ||| |||  |||||||  | ||||||||||||| ||||||    
T  37744893 atacgtttttattttaatacgggcctcttttcaattatagagtcgagccttcgaattcgtaggaacggccatgc 37744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36362900 - 36362798
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||| ||| ||||||||||||        |||   |||||||||||||| ||| |||||||||||||||||  |  |||||| ||||||    
T  36362900 tttaaaaaatttaaacagagcattgttcttttaaaaaatatatttttttttattttattatgggtctcttttcacttacagagtcaggcctctagattcg 36362801  T
Q  101 tag 103  Q
    |||    
T  36362800 tag 36362798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 2611291 - 2611182
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| |||||||||||||||  |||||||||||||| |||||||||||||| ||||||     
T  2611291 tttaaaaaatttaaatagaacattgttcttttaaaaaaaa-atacttttttattttattacaagcctcttttcacttgcagaaccgagcctccggattca 2611193  T
Q  101 taggaacgacc 111  Q
    |||||||||||    
T  2611192 taggaacgacc 2611182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12419524 - 12419419
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| || ||||||||||||||||||||||||||||||| | ||||||||| ||||||     
T  12419524 tttaaaaaatttaaatagaacattgttcttttaaaaaaa--atacgttgttattttattacgggcctcttttcacttacaaagccgagcctccggattca 12419427  T
Q  101 taggaacg 108  Q
    ||||||||    
T  12419426 taggaacg 12419419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 12981438 - 12981502
Alignment:
Q  44 acatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||||||||    
T  12981438 acatttttattttattacgagcctcttttcacctacagaaccgaacctccggattcgtaggaacg 12981502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 23020474 - 23020409
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||  ||||||||||||||    
T  23020474 atacatttttattttattacggacctcttttcacttacagaaccg-gcctccagattcgtaggaacg 23020409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 38971364 - 38971436
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgaccatg 114  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||| |||| ||||||||| |||| |||||    
T  38971364 atacatttttattttattacgggtctcttttcacttacaaagccgagtctctagattcgtagaaacggccatg 38971436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23744869 - 23744974
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||| |||||||||||||||||         ||||||||||||||| ||||||||||||||||||||| ||| | |||||||   |||||    
T  23744869 tttaaaaaatttaattagaacattgttctttttaaaaaa--atacatttttatttttttacgggcctcttttcacttatagagctgagcctccaaattcg 23744966  T
Q  101 taggaacg 108  Q
    ||||||||    
T  23744967 taggaacg 23744974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6765710 - 6765609
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||||||||||||          | || |||||||||||||||| |||||||||||  |||||||| ||||||| |||||||    
T  6765710 tttaaaaaatttaaatagaacattgttctttaaaaa-----aaacttttttattttattacgagcctcttttcatctacagaactgagcctccggattcg 6765616  T
Q  101 taggaac 107  Q
    |||||||    
T  6765615 taggaac 6765609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 26917715 - 26917652
Alignment:
Q  48 ttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgacc 111  Q
    |||||||||||||||| ||||||||||||||||||  | ||||||| |||||||| ||||||||    
T  26917715 ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaacgacc 26917652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23859146 - 23859251
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||||| |||| ||         |||| ||||||||||||||| || |||||||||||||||||  ||||||||   |||||    
T  23859146 tttaaaaaatttaaatagaacattattctcttaaacaaa--atacgtttttattttattacaggtctcttttcacttacagagtcgagcctccaaattcg 23859243  T
Q  101 taggaacg 108  Q
    ||||||||    
T  23859244 taggaacg 23859251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 7398527 - 7398632
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacattttta-ttttattacgggcctcttttcacttacagaaccgagcctctggattcgta 102  Q
    |||||||||||||||||||||||||||||         |||  |||||| |||||||||||| |||||||||||||||||  |||||||   | ||||||    
T  7398527 aaaaaatttaaatagaacattgttcttttataaaaaaaatatgtttttatttttattacgggtctcttttcacttacagagtcgagcctacagcttcgta 7398626  T
Q  103 ggaacg 108  Q
    ||||||    
T  7398627 ggaacg 7398632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 9014163 - 9014119
Alignment:
Q  48 ttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||    
T  9014163 ttttattttattacgggcctcttttcacttatagagtcgagcctc 9014119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18201210 - 18201313
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||| |||||||| |||         ||| |||||||||||||||||| | || |||||||| |||| ||||||||| |||||||    
T  18201210 tttaaaaaatttaaatagatcattgttcgtttaaaaaa---atatatttttattttattacggacatc-tttcacttgcagagccgagcctccggattcg 18201305  T
Q  101 taggaacg 108  Q
    | ||||||    
T  18201306 tgggaacg 18201313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21763616 - 21763513
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||| ||||||||          |||| |||||||||||||||||  ||||||| ||||| ||||| |||||||  |||| |    
T  21763616 tttaaaaaatttaaatagaacaatgttctttaaaaaa----atacgtttttattttattacggatctctttttacttatagaacagagcctccagatttg 21763521  T
Q  101 taggaacg 108  Q
    ||||||||    
T  21763520 taggaacg 21763513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 27237452 - 27237421
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttctttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  27237452 tttaaaaaatttaaatagaacattgttctttt 27237421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 9014759 - 9014709
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    ||||| |||||||||||||||||| ||||||| |||| ||| |||||||||    
T  9014759 atacagttttattttattacgggcttcttttcccttatagagccgagcctc 9014709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 36902952 - 36902924
Alignment:
Q  2 ttaaaaaatttaaatagaacattgttctt 30  Q
    |||||||||||||||||||||||||||||    
T  36902952 ttaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16097080 - 16097188
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||| ||||||||||||||| |||||||||   |||||    
T  16097080 tttaaaaaatttaaatagaacattgttcttttaaacaaa--atacatatttattttattacgggccacttttcacttacagagccgagcctccaaattcg 16097177  T
Q  101 taggaacgacc 111  Q
    |||||||||||    
T  16097178 taggaacgacc 16097188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21665730 - 21665627
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| ||||||||||||||||| |||| ||||  ||||||    
T  21665730 tttaaaaaatttaaatagaacattgttcttttaaaaaa---atacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcg 21665634  T
Q  101 taggaac 107  Q
    |||||||    
T  21665633 taggaac 21665627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 12134019 - 12133965
Alignment:
Q  50 ttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtagg 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12134019 ttattttattacggacctcttttcacttacagaaccgagcctctggattcgtagg 12133965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24035575 - 24035467
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| ||||||||||||||||||| |||||||||||||| || ||||| || |||||||    
T  24035575 tttaaaaaatttaaatagaacattgttcttttaaaagaa--atacgtttttattttattacgggcatcttttcacttacaaaatcgagcatccggattcg 24035478  T
Q  101 taggaacgacc 111  Q
    |||||| ||||    
T  24035477 taggaatgacc 24035467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 37182755 - 37182824
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgacc 111  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||    
T  37182755 atacgtttttattttattacgggtctcttttcacttacagagccgagcctccggattcttaggaacgacc 37182824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 7742115 - 7742055
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaac 107  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  7742115 tttttattttatcacgggcctcttttcacttacagaaccgaacctccggattcgtaggaac 7742055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 28425698 - 28425632
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||||||||| |||||||||| ||||| || |||||||||| |||||||||||||    
T  28425698 atacatttttattttattacggacctcttttcatttacaaaaacgagcctctgaattcgtaggaacg 28425632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 11952575 - 11952514
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  11952575 tttttattttattacgggtctcttttcacttacagaaccgagccttcagattcgtaggaacg 11952514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 12694794 - 12694855
Alignment:
Q  46 atttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaac 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||    
T  12694794 atttttattttattacgggtctcttttcacttacagagccgagcctccggattcgtaagaac 12694855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 42029260 - 42029332
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgaccatg 114  Q
    |||||||||||| ||||||||  |||||||||||||||| |||||||||||  ||||| ||||||||||||||    
T  42029260 atacatttttatattattacgaacctcttttcacttacaaaaccgagcctccagattcttaggaacgaccatg 42029332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 44914932 - 44914846
Alignment:
Q  2 ttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcct 91  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  44914932 ttaaaaaatttaaatagaacattgttcttttaaaaaag---tacatttttattttattacggacctcttttcacttacagagctgagcct 44914846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13800574 - 13800495
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacaga 82  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||||  ||||||||||||||||||    
T  13800574 tttaaaaaatttaaatagaacattgttctttttaaaaaa--atacatttttattttattacgaacctcttttcacttacaga 13800495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22727487 - 22727384
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| |||||||||||||||  ||||||||||||||||||   |||||||| | |||||    
T  22727487 tttaaaaaatttaaatagaacattgttcttttaaaaaaa--atacgtttttattttattacttgcctcttttcacttacagcgtcgagcctccgaattcg 22727390  T
Q  101 taggaa 106  Q
    ||||||    
T  22727389 taggaa 22727384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 38400870 - 38400978
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||||||||||| |        ||||  ||||||||||||| |||| ||||||||||||||||| |||| | |  |||||||    
T  38400870 tttaaaaaatttaaatagaacattgttcttataaaaaa--tatatgtttttattttattgcgggtctcttttcacttacagagccgaactttcggattcg 38400967  T
Q  101 taggaacgacc 111  Q
    || ||||||||    
T  38400968 taagaacgacc 38400978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 16227351 - 16227291
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||| || | |||||||||||||||||| ||||||| | |||||||||||||    
T  16227351 tttttattttattaaggtc-tcttttcacttacagaactgagcctccgaattcgtaggaacg 16227291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 11952618 - 11952588
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttt 31  Q
    |||||||||||||||||||||||||||||||    
T  11952618 tttaaaaaatttaaatagaacattgttcttt 11952588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 42029217 - 42029247
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttt 31  Q
    |||||||||||||||||||||||||||||||    
T  42029217 tttaaaaaatttaaatagaacattgttcttt 42029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 5942779 - 5942848
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgacc 111  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||    
T  5942779 atacatttttattttattacggtcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 5942848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 7944552 - 7944447
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||| ||||||||||||||         |||||||||||||||||||||| |||||||||| |||||||| ||||| ||  ||||||    
T  7944552 tttaaaaaatttaaataaaacattgttcttttaaaaaaa--atacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcg 7944455  T
Q  101 taggaacg 108  Q
    ||||||||    
T  7944454 taggaacg 7944447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 15167445 - 15167336
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||| ||||||||||||||||| | | |||||||||||||| | ||||||   ||||||    
T  15167445 tttaaaaaatttaaatagaacattgttcttttaaaaataaaatacgtttttattttattacggactttttttcacttacagagcagagccttcagattcg 15167346  T
Q  101 taggaacgac 110  Q
    ||||||||||    
T  15167345 taggaacgac 15167336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30674433 - 30674330
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||| |||||||||||||||||||||||          |||| |||||||||||||||| ||||||||||||||||||| |||||||||  ||||||    
T  30674433 tttaaaacatttaaatagaacattgttctttaaaaaaaa--atacgtttttattttattacgagcctcttttcacttacagagccgagcctccagattcg 30674336  T
Q  101 taggaa 106  Q
    ||||||    
T  30674335 taggaa 30674330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 34048697 - 34048630
Alignment:
Q  44 acatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgacc 111  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||   ||||||||||||||||    
T  34048697 acatttttattttattacgggtctattttcacttacagagccgagcctccaaattcgtaggaacgacc 34048630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5973137 - 5973038
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||| | |||||||||| ||||||| || |||||| ||| |||    
T  5973137 tttaaaaaatttaaatagaacattgttcttttaaaacga--atacatttttattttattacagacctcttttcatttacagagccaagcctccggaatcg 5973040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 38009137 - 38009076
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||| |||||| ||||||||    
T  38009137 tttttattttattacggacttcttttcagttacagaaccgagcctccggattcataggaacg 38009076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 39332394 - 39332333
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||| | |||||||||| |||||||||||||||| | |||||||||||||    
T  39332394 tttttattttattacgagtctcttttcacctacagaaccgagcctccgaattcgtaggaacg 39332333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 14509971 - 14509904
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacga 109  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||  |||   ||||||||||||||    
T  14509971 atacatttttattttattacgggcctattttcacttgcagaaccgaatctccaaattcgtaggaacga 14509904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 41677200 - 41677098
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtag 103  Q
    |||||||||||||||||||||||||||||         |||| ||||||||||||||  || ||||||||||| ||||| ||||||||| | ||||||||    
T  41677200 aaaaaatttaaatagaacattgttcttttaaaaaaaa-atacgtttttattttattataggtctcttttcactcacagagccgagcctccgaattcgtag 41677102  T
Q  104 gaac 107  Q
    ||||    
T  41677101 gaac 41677098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15078831 - 15078938
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||| ||||||||||||||| |||||||         |||| ||||||||||||||||| | |||||||||||||||| | ||||||   ||||||    
T  15078831 tttaaaaattttaaatagaacattattcttttaaaaaaa--atacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcg 15078928  T
Q  101 taggaacgac 110  Q
    ||||||||||    
T  15078929 taggaacgac 15078938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 11290303 - 11290367
Alignment:
Q  44 acatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||||||||||  | ||||||||||||||| |  |||| ||||| |||||||||||||    
T  11290303 acatttttattttattacatgtctcttttcacttacaaagtcgagtctctgaattcgtaggaacg 11290367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 29364468 - 29364536
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgaccatgc 115  Q
    ||||||||||   ||||| ||||||| ||||||||| ||||| ||||  ||||||||||||||||||||    
T  29364468 tttttatttttaaacgggtctctttttacttacagagccgagtctctaaattcgtaggaacgaccatgc 29364536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34868207 - 34868108
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||||||||||| ||||||          |||| |||||||||||||| ||| |||||||||||||| || |||||||||  ||||||    
T  34868207 tttaaaaaatttaaatagaacattattctttaaaaaaaaa-atacgtttttattttattatgggtctcttttcacttacggagccgagcctcgagattcg 34868109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 8646278 - 8646309
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttctttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  8646278 tttaaaaaatttaaatagaacattgttctttt 8646309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 34789853 - 34789806
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagc 89  Q
    |||||||||||||||||||||| ||| |||||||||| ||| ||||||    
T  34789853 atacatttttattttattacggaccttttttcacttatagagccgagc 34789806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 9108566 - 9108596
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttt 31  Q
    |||||||||||||||||||||||||||||||    
T  9108566 tttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 34812748 - 34812682
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||||||||| ||   ||||||||||||||||||  |||||| | ||||| |||||||||    
T  34812748 atacatttttattttatgacatacctcttttcacttacagagtcgagcccccggatttgtaggaacg 34812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 8102985 - 8103066
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacaga 82  Q
    ||||||||||||||||| |||||| || ||||         |||||||||||||||||||  |||||||||||| |||||||    
T  8102985 tttaaaaaatttaaatataacattattattttaagaaaaaaatacatttttattttattataggcctcttttcatttacaga 8103066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 38843473 - 38843420
Alignment:
Q  55 ttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||| |||||||||||||| ||| |||||||||   |||||||||||||    
T  38843473 ttattacggacctcttttcacttagagagccgagcctccaaattcgtaggaacg 38843420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 288 - 193
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggatt 98  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||    
T  288 tttaaaaaatttaaatagaacattgttcttttaataaaa--atacatttttattttattatgggcctctattcacttgcagagccgagcctctggatt 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 230889 - 230786
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||| ||||||||||||||||||||||||||        |||||||||||  |||||||||||||||||||| |||||||| |||||| || |||||||    
T  230889 tttaacaaatttaaatagaacattgttcttttaaaaaa--tatacattttt--tttattacgggcctcttttcccttacagatccgagcttccggattcg 230794  T
Q  101 taggaacg 108  Q
    ||||||||    
T  230793 taggaacg 230786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 4490 - 4402
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctg 94  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||||||| |||| |||||||||||    
T  4490 aaaaaatttaaatagaacattgttcttttaataaaa--atacatttttattttattacgggcctctattcacttgcagagccgagcctctg 4402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 20611908 - 20611972
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgacc 111  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  20611908 tttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgacc 20611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2477614 - 2477510
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||||||||||| ||||||||||| |||         ||||| | ||||||||||||||| |||||||||||||||||||||||||||  |||| |    
T  2477614 tttaaaaaatttaaattgaacattgttcgtttaaaaaa---atacaatcttattttattacgggtctcttttcacttacagaaccgagcctccagatttg 2477518  T
Q  101 taggaacg 108  Q
    ||||||||    
T  2477517 taggaacg 2477510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 27994870 - 27994936
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||| |||||||||||||||| || | ||||| |||||||| |||||| || |||||||||||||||    
T  27994870 atacgtttttattttattacgagcttattttcgcttacagagccgagcttccggattcgtaggaacg 27994936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 27131185 - 27131121
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgacc 111  Q
    ||||||||||||||| |  ||||||||| ||| |||   |||||||||||||||| |||||||||    
T  27131185 tttttattttattacagatctcttttcatttatagagttgagcctctggattcgttggaacgacc 27131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 39045 - 39108
Alignment:
Q  47 tttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgac 110  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||  ||||||||||||||||    
T  39045 tttttattttattacggacctctttttacttacagaatcgagcctccagattcgtaggaacgac 39108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 25855497 - 25855586
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  25855497 tttaaaaaatttaaatagaacattgttctttaaaaaaac--atacatttttattttattacgggccttttttcatttacataaccgagcctc 25855586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 36179549 - 36179482
Alignment:
Q  41 tatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||| |||||||||||||||||||||||||||||||||  | ||| |||||| |||||||||||||||    
T  36179549 tatatatttttattttattacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacg 36179482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 23641308 - 23641242
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||| |||||||||||| ||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  23641308 atacgtttttattttatcacgggtctcttttcacctacagaaccgagcctccagattcgtaggaacg 23641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 54574814 - 54574741
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacgaccatgc 115  Q
    |||||| |||||||||||||||| ||| |||||||| ||| ||||||||||  |||||||||||||| ||||||    
T  54574814 atacatctttattttattacgggtctcatttcacttccagcaccgagcctccagattcgtaggaacggccatgc 54574741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 49393165 - 49393269
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    ||||||||||||||| |||||||||||||||          ||||||||||||||||||||| | || |||||||||||| | ||||||||| |||||||    
T  49393165 tttaaaaaatttaaagagaacattgttctttaaaaaaaa--atacatttttattttattacgagtcttttttcacttaca-agccgagcctccggattcg 49393261  T
Q  101 taggaacg 108  Q
    ||||||||    
T  49393262 taggaacg 49393269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 52973437 - 52973495
Alignment:
Q  50 ttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||  |||||||||||||    
T  52973437 ttattttattatgggcctcttttctcttacagaatcgagcctctaaattcgtaggaacg 52973495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 32319147 - 32319098
Alignment:
Q  43 tacatttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    ||||||||||||||||||| | ||| |||||||||||||||| |||||||    
T  32319147 tacatttttattttattacagacctattttcacttacagaactgagcctc 32319098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26279618 - 26279649
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttctttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  26279618 tttaaaaaatttaaatagaacattgttctttt 26279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 52374735 - 52374763
Alignment:
Q  4 aaaaaatttaaatagaacattgttctttt 32  Q
    |||||||||||||||||||||||||||||    
T  52374735 aaaaaatttaaatagaacattgttctttt 52374763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1427 - 1534
Alignment:
Q  1 tttaaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcg 100  Q
    |||||||| ||||||||||||||| |||||||         |||| ||||||||||||||||| | |||||||||||||||| | ||||||   ||||||    
T  1427 tttaaaaattttaaatagaacattattcttttaaaaaaa--atacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcg 1524  T
Q  101 taggaacgac 110  Q
    ||||||||||    
T  1525 taggaacgac 1534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 182436 - 182493
Alignment:
Q  51 tattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||||||||||||| |||||||| ||| |||||||||||  |||||||||||||    
T  182436 tattttattacgggcctcatttcactttcagcaccgagcctctaaattcgtaggaacg 182493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 206480 - 206417
Alignment:
Q  42 atacatttttattttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaac 107  Q
    ||||||||||||||||||||   |||||||||||||||||| ||  ||||| ||||||||||||||    
T  206480 atacatttttattttattacaaacctcttttcacttacagagcc--gcctcaggattcgtaggaac 206417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 40163 - 40240
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacaga 82  Q
    |||||| ||||||||||||||||||||||         |||||||||||||||||||||  ||||||||||||||||||    
T  40163 aaaaaaattaaatagaacattgttctttttaaaaaaa-atacatttttattttattacgaacctcttttcacttacaga 40240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 138223 - 138300
Alignment:
Q  4 aaaaaatttaaatagaacattgttcttttnnnnnnnntatacatttttattttattacgggcctcttttcacttacaga 82  Q
    |||||| ||||||||||||||||||||||         |||||||||||||||||||||  ||||||||||||||||||    
T  138223 aaaaaaattaaatagaacattgttctttttaaaaaaa-atacatttttattttattacgaacctcttttcacttacaga 138300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 23980 - 23925
Alignment:
Q  53 ttttattacgggcctcttttcacttacagaaccgagcctctggattcgtaggaacg 108  Q
    |||||||| | ||||||||||||||| |||||||||||||   |||||||||||||    
T  23980 ttttattatgagcctcttttcacttagagaaccgagcctccaaattcgtaggaacg 23925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 351324 - 351276
Alignment:
Q  44 acatttttattttattacgggcctcttttcacttacagaaccgagcctc 92  Q
    |||||||||||||||||||||| | ||||||| |||||| | |||||||    
T  351324 acatttttattttattacgggcattttttcacatacagagctgagcctc 351276  T

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