View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15638_low_1 (Length: 358)
Name: NF15638_low_1
Description: NF15638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15638_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 23523752 - 23524094
Alignment:
| Q |
1 |
ttctaaactcaaagagttgctatatattccatttatttttctattataagaaaaaatcatagtgtgaaatatgaaagaatttcacacttctattttcagt |
100 |
Q |
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| T |
23523752 |
ttctaaactcaaagagttgttatatattccatttatttttctattataagaaaaaatcatagtgtgaaatatgaaagaatttcacacttctattttcaat |
23523851 |
T |
|
| Q |
101 |
catttttgttctcagatccgttcaagagcattggatttgaatctttattatttcatttttacgcgaaatgttagtaacttaatgatcatattagttttca |
200 |
Q |
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| T |
23523852 |
catttttgttctcagatccattcaagagcattggatttgaatctttattatttcatttttatgcgaaatgttagtaacttaatgatcatattagttttca |
23523951 |
T |
|
| Q |
201 |
ggatttgaactctgaacctccttcttaaaactcgttcgatgacctttaggtatcatcagatcagtattagttctttgcaacaagttaaacatgagatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23523952 |
ggatttgaactctgaacctccttcttaaaactcgtttgatgacctttaggtatcatcagatcagtattagttctttgcaacaagttaaacatgagatttc |
23524051 |
T |
|
| Q |
301 |
aagcatctatgtatgagtacactagtactatatggtgtttaat |
343 |
Q |
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| T |
23524052 |
aagcatctatgtatgagtacactagtactatatggtgtttaat |
23524094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 42427905 - 42427969
Alignment:
| Q |
167 |
aatgttagtaacttaatgatcatattagttttcaggatttgaactctgaacctccttcttaaaac |
231 |
Q |
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| T |
42427905 |
aatgttagtaagttagtggttatgttagttttcaggatttgaactctggacttcttgcttaaaac |
42427969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 3286043 - 3286085
Alignment:
| Q |
191 |
ttagttttcaggatttgaactctgaacctccttcttaaaactc |
233 |
Q |
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|||||||||||||||||||| |||||| || |||||||||||| |
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| T |
3286043 |
ttagttttcaggatttgaaccctgaacttctttcttaaaactc |
3286085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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