View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15639_high_12 (Length: 334)
Name: NF15639_high_12
Description: NF15639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15639_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 25450628 - 25450871
Alignment:
| Q |
17 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25450628 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
25450727 |
T |
|
| Q |
117 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25450728 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25450827 |
T |
|
| Q |
217 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25450828 |
acagccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25450871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 25446065 - 25446308
Alignment:
| Q |
17 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25446065 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagtcagtacaattgacttaccttattcatgt |
25446164 |
T |
|
| Q |
117 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25446165 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25446264 |
T |
|
| Q |
217 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
260 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25446265 |
acaaccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25446308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 2607085 - 2606833
Alignment:
| Q |
17 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2607085 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagttagtacaattgacttaccttattcatgt |
2606986 |
T |
|
| Q |
117 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2606985 |
acaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgt |
2606886 |
T |
|
| Q |
217 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
267 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2606885 |
acagccatgtgtaaaatatatagcagaaatatattagcctttgttattttata |
2606833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 31137831 - 31137784
Alignment:
| Q |
268 |
gactttgctaatttggagctcaataccacattctttagtgatgatgtc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31137831 |
gactttgctaatttggagctcaataccacattctttagtgattatgtc |
31137784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 31901369 - 31901621
Alignment:
| Q |
17 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
31901369 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatcaactgtcattagtcagtaaagttgacttaccttattcatgt |
31901468 |
T |
|
| Q |
117 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31901469 |
acaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
31901568 |
T |
|
| Q |
217 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
267 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
31901569 |
acagccgtgtgtaaaagatatagcataaatatattagcctttgttattttata |
31901621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 31925239 - 31925485
Alignment:
| Q |
20 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgtaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
|
| Q |
120 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
219 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
|
| Q |
220 |
gccgtgtgtaaa--atacagcagaaatatattagcctttgttatttta |
265 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttgttatttta |
31925485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University