View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15639_high_16 (Length: 306)
Name: NF15639_high_16
Description: NF15639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15639_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 26677336 - 26677636
Alignment:
| Q |
1 |
caagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaaccatcacgcac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
26677336 |
caagctgccataaaatccgaaactagattatccaagcctaccctgtccataccaccactcaaataccacacttccaaaaaaaaaaccaaccatcacgcac |
26677435 |
T |
|
| Q |
101 |
gcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaacacc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26677436 |
gcaactatctccatcacaccaagcaaacaccaataacctcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaacacc |
26677535 |
T |
|
| Q |
201 |
gtaagaaacgattgtgatgctctgtccccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccggttcatctca |
299 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
26677536 |
gtaagaaacgattttgatgctccgtctccctactacatcaccgccaccacacaccacaaaaccgccaccacacacacaacccgaaacccggttcttctca |
26677635 |
T |
|
| Q |
300 |
c |
300 |
Q |
| |
|
| |
|
|
| T |
26677636 |
c |
26677636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 13980769 - 13980936
Alignment:
| Q |
109 |
ctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaac-accgtaagaa |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||| ||||||| |||||| | |||||||| |
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|
| T |
13980769 |
ctccatcacaccacgcaaacaccaataatctcgctaaccctcccgttggccaccacccattttgccaccgtttaaacatcaccgaaaacaaacgtaagaa |
13980868 |
T |
|
| Q |
208 |
acgattgtgatgctctgtccccctgctacatcaccgccgccacataccacaaaaccgccaccacacac |
275 |
Q |
| |
|
|||||| ||||||| || ||| || |||||| || ||||| ||||||||||| ||||||||||| |
|
|
| T |
13980869 |
acgattccgatgctccatcttcctactgaatcaccaccaccacacaccacaaaaccaccaccacacac |
13980936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 13980678 - 13980728
Alignment:
| Q |
20 |
aaactagattatccaagcctaccccgtccataccaccactcaaaaaccaca |
70 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
13980678 |
aaactagattatccaagcctaccccatccatatcaccatgcaaaaaccaca |
13980728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 51267009 - 51267309
Alignment:
| Q |
1 |
caagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaaccatcacgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |
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|
| T |
51267009 |
caagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccgcgcaaaaaccacacttccaaaaaaaaccccaaccatcacgcac |
51267108 |
T |
|
| Q |
101 |
gcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaacacc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
51267109 |
gcaactatctccatcacaccacacaaacactaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccgaaaacacc |
51267208 |
T |
|
| Q |
201 |
gtaagaaacgattgtgatgctctgtccccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccggttcatctca |
299 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
51267209 |
gtaagaaacgattatgatgcttcgtctccctactacatcaccgccaccacacaccacaaaaccgccaccacacacacaacccgaaatccggttcttctca |
51267308 |
T |
|
| Q |
300 |
c |
300 |
Q |
| |
|
| |
|
|
| T |
51267309 |
c |
51267309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 27261201 - 27261370
Alignment:
| Q |
87 |
caaccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagaca |
186 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||| || |||||||| |||||| | ||||||| |||||||||||| |
|
|
| T |
27261201 |
caaccatcacgcaagcaactatttccatcacaccacgcaaacaccaataacctcgctaaccctcccgttgaccaccatccattttgctaccatttagaca |
27261300 |
T |
|
| Q |
187 |
tcactgaaaac-accgtaagaaacgattgtgatgctctgtccccctgctacatcaccgccgccacataccac |
257 |
Q |
| |
|
|||| ||||| ||||||| |||| || |||||||| ||| ||| ||||||||||||| ||||| ||||| |
|
|
| T |
27261301 |
tcaccaaaaacaaccgtaaaaaac--ttatgatgctccgtctgcctactacatcaccgccaccacacaccac |
27261370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19289969 - 19290193
Alignment:
| Q |
1 |
caagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaaccatcacgcac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||| ||||||||||||| |
|
|
| T |
19289969 |
caagttgccacaaaatccgaaactagattatccaagcctaccccatccataccaccatgcaaaaatcacacctccaaaacccccc-caaccatcacgcaa |
19290067 |
T |
|
| Q |
101 |
gcaactatctccatcacaccaatcaaacaccaataacttcgct-acccttcccgttggccaccacctattttgccaccatttagacatcactgaaaac-a |
198 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |||||| ||||| | || ||||||||||||||||| ||||| ||||| |||| ||||||| ||| | | |
|
|
| T |
19290068 |
gcagctatctccatcacaccacgcaaacactaataacctcgctaaaccctcccgttggccaccacccattttaccaccgtttaaacatcaccaaaagcaa |
19290167 |
T |
|
| Q |
199 |
ccgtaagaaacgattgtgatgctctg |
224 |
Q |
| |
|
||||||||||| ||| |||||||||| |
|
|
| T |
19290168 |
ccgtaagaaacaattatgatgctctg |
19290193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 3958883 - 3958730
Alignment:
| Q |
1 |
caagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaaccatcacgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||| ||| |||||||||| || |
|
|
| T |
3958883 |
caagctgccacaaaatccgaaactagattatccacgcctaccccatccatacccccacgcaaaaaccacacctcccacaaaacccccaaccatcacacaa |
3958784 |
T |
|
| Q |
101 |
gcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgtt |
155 |
Q |
| |
|
| | || |||||||||||||| |||||||||||||| |||||| || ||||||| |
|
|
| T |
3958783 |
gtagct-tctccatcacaccacacaaacaccaataacctcgctaaccctcccgtt |
3958730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 27844566 - 27844699
Alignment:
| Q |
90 |
ccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgct-acccttcccgttggccaccacctattttgccaccatttagacatc |
188 |
Q |
| |
|
||||||| || ||| ||||||||||||||||| |||||||||||||| ||| | | || ||| ||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
27844566 |
ccatcacacaagcagctatctccatcacaccacgcaaacaccaataacctcgttaaaccctcctgttggcc-ccacccattttgccaccatttaaacatc |
27844664 |
T |
|
| Q |
189 |
actgaaaac-accgtaagaaacgattgtgatgctc |
222 |
Q |
| |
|
|| ||| | ||||||| |||||||| |||||||| |
|
|
| T |
27844665 |
accaaaagcaaccgtaaaaaacgattttgatgctc |
27844699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 27844699 - 27844748
Alignment:
| Q |
241 |
ccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccg |
289 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27844699 |
ccgccaccacaaaccacaagaccgccaccacacacacaacccgaaacccg |
27844748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 276
Target Start/End: Complemental strand, 13995184 - 13995031
Alignment:
| Q |
124 |
caaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaaca-ccgtaagaaacgattgtgatgctc |
222 |
Q |
| |
|
|||||||||||||| |||||| || |||| |||||||||||| ||||||| ||| |||| ||||||| |||||| ||||||||||||||| | |||||| |
|
|
| T |
13995184 |
caaacaccaataacctcgctaaccctcccattggccaccacccattttgcaaccgtttaaacatcaccaaaaacaaccgtaagaaacgattctaatgctc |
13995085 |
T |
|
| Q |
223 |
tgtccccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca |
276 |
Q |
| |
|
|||| ||| || |||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
13995084 |
tgtcttcctactgcatcaccgccaccacacaccacaaaaccgccaccatacaca |
13995031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13995288 - 13995217
Alignment:
| Q |
1 |
caagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacact |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
13995288 |
caagctgccacaaaatccgaaactagattattcaagcctacctcatccataccaccacgcaaaaaccacact |
13995217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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