View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15639_high_17 (Length: 301)

Name: NF15639_high_17
Description: NF15639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15639_high_17
NF15639_high_17
[»] chr8 (15 HSPs)
chr8 (134-280)||(38613611-38613757)
chr8 (9-137)||(6311097-6311227)
chr8 (9-135)||(7290082-7290211)
chr8 (9-134)||(36979184-36979308)
chr8 (9-134)||(4760242-4760366)
chr8 (9-134)||(30655448-30655572)
chr8 (28-134)||(18853356-18853457)
chr8 (15-134)||(18870734-18870849)
chr8 (30-113)||(25328456-25328540)
chr8 (30-113)||(39785002-39785086)
chr8 (9-143)||(10689309-10689442)
chr8 (9-98)||(33037972-33038063)
chr8 (30-113)||(35745213-35745298)
chr8 (39-113)||(10684452-10684528)
chr8 (60-136)||(19752609-19752683)
[»] chr5 (21 HSPs)
chr5 (9-135)||(1457317-1457446)
chr5 (9-134)||(27444771-27444899)
chr5 (9-134)||(43592080-43592208)
chr5 (9-134)||(43598525-43598653)
chr5 (9-134)||(43604017-43604145)
chr5 (9-134)||(43609509-43609637)
chr5 (9-134)||(27449615-27449743)
chr5 (9-117)||(30631227-30631336)
chr5 (9-113)||(28807731-28807837)
chr5 (9-113)||(15044512-15044616)
chr5 (69-134)||(31180079-31180142)
chr5 (30-113)||(37556802-37556887)
chr5 (30-113)||(37561624-37561709)
chr5 (9-134)||(38191983-38192105)
chr5 (9-134)||(38219208-38219330)
chr5 (30-113)||(2785197-2785282)
chr5 (30-113)||(31397171-31397256)
chr5 (30-113)||(31402028-31402113)
chr5 (30-95)||(33791158-33791223)
chr5 (78-134)||(35387474-35387527)
chr5 (30-95)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (9-135)||(51520257-51520386)
chr4 (9-113)||(9224562-9224668)
chr4 (9-113)||(9229349-9229455)
chr4 (9-135)||(56146867-56146996)
chr4 (9-113)||(3813846-3813953)
chr4 (9-113)||(45347973-45348079)
chr4 (9-113)||(45357452-45357558)
chr4 (9-113)||(18855549-18855655)
chr4 (9-134)||(24741748-24741871)
chr4 (9-134)||(29760449-29760572)
chr4 (30-113)||(5732486-5732568)
[»] scaffold0135 (1 HSPs)
scaffold0135 (9-113)||(35217-35323)
[»] chr7 (17 HSPs)
chr7 (9-113)||(12396735-12396841)
chr7 (9-113)||(12406155-12406261)
chr7 (30-113)||(24024506-24024589)
chr7 (9-113)||(4866553-4866659)
chr7 (30-136)||(2057763-2057866)
chr7 (30-113)||(31109761-31109844)
chr7 (9-134)||(20357713-20357837)
chr7 (9-134)||(1533608-1533730)
chr7 (9-113)||(19992135-19992241)
chr7 (9-113)||(21812395-21812501)
chr7 (9-134)||(21645818-21645940)
chr7 (59-134)||(2479148-2479221)
chr7 (59-138)||(47263485-47263562)
chr7 (39-113)||(16879894-16879970)
chr7 (39-113)||(16884750-16884826)
chr7 (39-113)||(24261511-24261587)
chr7 (39-113)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (9-113)||(11856795-11856901)
chr6 (9-113)||(14737732-14737838)
chr6 (9-113)||(14742591-14742697)
chr6 (30-113)||(22010875-22010958)
chr6 (9-113)||(6438324-6438429)
chr6 (9-113)||(28184325-28184434)
chr6 (30-113)||(28155749-28155832)
chr6 (9-134)||(5674934-5675057)
chr6 (9-134)||(30125960-30126084)
chr6 (30-113)||(6005239-6005324)
chr6 (30-95)||(5343322-5343387)
chr6 (30-95)||(33330625-33330690)
chr6 (30-113)||(33336122-33336207)
chr6 (30-113)||(16838566-16838651)
chr6 (59-134)||(31936398-31936470)
[»] chr3 (14 HSPs)
chr3 (9-113)||(22173350-22173456)
chr3 (9-136)||(7167049-7167174)
chr3 (30-113)||(18656256-18656338)
chr3 (9-134)||(2671752-2671876)
chr3 (31-134)||(40372986-40373085)
chr3 (9-135)||(8477170-8477295)
chr3 (30-134)||(8739254-8739354)
chr3 (30-134)||(9091492-9091592)
chr3 (30-113)||(8512037-8512122)
chr3 (30-113)||(8516917-8517002)
chr3 (9-134)||(28504022-28504145)
chr3 (30-113)||(2677266-2677351)
chr3 (30-113)||(2673110-2673195)
chr3 (30-113)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (30-113)||(44312802-44312885)
chr2 (9-136)||(11099093-11099219)
chr2 (9-113)||(32246607-32246714)
chr2 (30-113)||(39812166-39812250)
chr2 (9-134)||(14291295-14291419)
chr2 (9-134)||(9296567-9296691)
chr2 (30-113)||(19344243-19344327)
chr2 (30-113)||(19349101-19349185)
chr2 (9-134)||(25403443-25403565)
chr2 (9-134)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (9-113)||(25445246-25445352)
chr1 (9-113)||(39445322-39445428)
chr1 (9-113)||(44024029-44024135)
chr1 (35-113)||(41386571-41386650)
chr1 (30-113)||(41398060-41398144)
chr1 (9-113)||(1055168-1055274)
chr1 (30-95)||(43988644-43988709)
chr1 (37-98)||(24787564-24787624)
chr1 (9-134)||(24202932-24203054)
chr1 (78-134)||(19359079-19359132)
[»] scaffold0127 (1 HSPs)
scaffold0127 (35-113)||(34132-34211)
[»] scaffold0464 (1 HSPs)
scaffold0464 (9-113)||(185-291)
[»] scaffold0355 (2 HSPs)
scaffold0355 (30-113)||(9818-9902)
scaffold0355 (30-113)||(65-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (11-135)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (52-113)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (30-113)||(19343-19428)
scaffold0197 (39-113)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (30-113)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (30-113)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (9-134)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (59-134)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (39-113)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  134 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 233  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  234 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 280  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 6311227 - 6311097
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311227 tacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 6311128  T
Q  107 ggtgtgagtttcaaccggaatcacaacagaa 137  Q
    ||||||||||||||||||| |||||||||||    
T  6311127 ggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 7290082 - 7290211
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  7290082 tacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttcatt 7290181  T
Q  107 ggtgtgagttt-caaccggaatcacaacag 135  Q
    |||||||||||  ||||||| |||||||||    
T  7290182 ggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 36979308 - 36979184
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  36979308 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 36979212  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||||||| ||||||||    
T  36979211 ggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 4760242 - 4760366
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||| || |||||||||||| |||||  |||||||    
T  4760242 tacactagtctagggctgtttttgttgttgttgcttggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcatt 4760338  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    | ||||||||||||||||| ||||||||    
T  4760339 gatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 30655572 - 30655448
Alignment:
Q  9 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    |||||||||||||||||| |||| ||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   ||||||    
T  30655572 tacactagtctagggctgttttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcat 30655477  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||||||||||| ||||||||    
T  30655476 tggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 18853356 - 18853457
Alignment:
Q  28 ttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaat 127  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| |    
T  18853356 ttttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggatt 18853450  T
Q  128 cacaaca 134  Q
    |||||||    
T  18853451 cacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 18870734 - 18870849
Alignment:
Q  15 agtctagggctggttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgag 114  Q
    ||||||||||   ||||||||||||||||||||||||||   ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||    
T  18870734 agtctagggcgttttttgttgtttgcttggaaaccatttaa-ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgag 18870829  T
Q  115 tttcaaccggaatcacaaca 134  Q
    ||||||||||| ||||||||    
T  18870830 tttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 25328456 - 25328540
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 113  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328456 ttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 39785002 - 39785086
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    ||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39785002 ttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 10689309 - 10689442
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||  |||||| || ||||||||||  ||||||||||||||| |  ||||| ||||||||||||| ||||||||||||||| |||||  |||||||    
T  10689309 tacactacactagggttgtttttgttgttgttgcttggaaaccattaga-ctcatagattaccactatctcttgctccacacatctttgtt--tttcatt 10689405  T
Q  107 ggtgtgagtttcaaccggaatcacaacagaagcaaaa 143  Q
    ||||||||||||||||| || ||||||| || |||||    
T  10689406 ggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 33037972 - 33038063
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 98  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||||    
T  33037972 tacactagtctagggctgtttattgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 35745298 - 35745213
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  35745298 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 10684452 - 10684528
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  10684452 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 10684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  60 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 136  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 1457317 - 1457446
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1457317 tacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 1457416  T
Q  107 ggtgtgagttt-caaccggaatcacaacag 135  Q
    |||||||||||  ||||||| |||||||||    
T  1457417 ggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 27444899 - 27444771
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27444899 tacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttcatt 27444800  T
Q  107 ggtgtgagttt-caaccggaatcacaaca 134  Q
    |||||||||||  ||||||| ||||||||    
T  27444799 ggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 43592208 - 43592080
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43592208 tacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 43592109  T
Q  107 ggtgtgagttt-caaccggaatcacaaca 134  Q
    | ||||| |||  ||||||| ||||||||    
T  43592108 gatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 43598653 - 43598525
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43598653 tacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 43598554  T
Q  107 ggtgtgagttt-caaccggaatcacaaca 134  Q
    ||||||| |||  ||||||| ||||||||    
T  43598553 ggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 43604145 - 43604017
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43604145 tacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 43604046  T
Q  107 ggtgtgagttt-caaccggaatcacaaca 134  Q
    ||||||| |||  ||||||| ||||||||    
T  43604045 ggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 43609637 - 43609509
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43609637 tacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 43609538  T
Q  107 ggtgtgagttt-caaccggaatcacaaca 134  Q
    ||||||| |||  ||||||| ||||||||    
T  43609537 ggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 27449743 - 27449615
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  27449743 tacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttcatt 27449644  T
Q  107 ggtgtgagttt-caaccggaatcacaaca 134  Q
    |||||||||||  ||||||| ||||||||    
T  27449643 ggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 30631336 - 30631227
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  30631336 tacactagtctagggctg-ttttgttgttgttgcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcattgtttatttcatt 30631238  T
Q  107 ggtgtgagttt 117  Q
     ||||||||||    
T  30631237 tgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 28807731 - 28807837
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  28807731 tacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcatt 28807830  T
Q  107 ggtgtga 113  Q
    |||||||    
T  28807831 ggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 15044616 - 15044512
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||||    
T  15044616 tacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--tatttcatt 15044519  T
Q  107 ggtgtga 113  Q
    |||||||    
T  15044518 ggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  69 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 37556802 - 37556887
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556802 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 37561624 - 37561709
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561624 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 38192105 - 38191983
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38192105 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38192011  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||||||| ||||||||    
T  38192010 ggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 38219330 - 38219208
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38219330 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38219236  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||||||| ||||||||    
T  38219235 ggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 2785282 - 2785197
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2785282 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 31397171 - 31397256
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31397171 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 31402028 - 31402113
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31402028 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 33791223 - 33791158
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 95  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33791223 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  78 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 33768086 - 33768021
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 95  Q
    |||||||| |||||||   ||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33768086 ttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 51520386 - 51520257
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51520386 tacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 51520287  T
Q  107 ggtgtgagttt-caaccggaatcacaacag 135  Q
    |||||||||||  ||||||| |||||||||    
T  51520286 ggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 9224562 - 9224668
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9224562 tacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 9224661  T
Q  107 ggtgtga 113  Q
    |||||||    
T  9224662 ggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 9229349 - 9229455
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9229349 tacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 9229448  T
Q  107 ggtgtga 113  Q
    |||||||    
T  9229449 ggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 56146867 - 56146996
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  56146867 tacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 56146966  T
Q  107 ggtgtgagttt-caaccggaatcacaacag 135  Q
    ||||||| |||  ||||||| |||||||||    
T  56146967 ggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 3813953 - 3813846
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcat 105  Q
    |||||||||||||| ||| |||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3813953 tacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttcat 3813854  T
Q  106 tggtgtga 113  Q
    ||||||||    
T  3813853 tggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 45347973 - 45348079
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45347973 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45348072  T
Q  107 ggtgtga 113  Q
    |||||||    
T  45348073 ggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 45357452 - 45357558
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45357452 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45357551  T
Q  107 ggtgtga 113  Q
    |||||||    
T  45357552 ggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 18855655 - 18855549
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  18855655 tacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcatt 18855556  T
Q  107 ggtgtga 113  Q
    |||||||    
T  18855555 ggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 24741871 - 24741748
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||    
T  24741871 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcatt 24741776  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||||||| ||||||||    
T  24741775 ggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 29760572 - 29760449
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||||  | | |||||||||||||||| ||||||||||||||| ||||||  ||||||    
T  29760572 tacactagtctagggttg-ttttgttgttgttgcttggaaaccattttgttt-attgattaccactatctcttgctccacacatctttgttt--ttcatt 29760477  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||||||| ||||||||    
T  29760476 ggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 5732568 - 5732486
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  5732568 ttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 35217 - 35323
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35217 tacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 35316  T
Q  107 ggtgtga 113  Q
    |||||||    
T  35317 ggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 12396841 - 12396735
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12396841 tacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 12396742  T
Q  107 ggtgtga 113  Q
    |||||||    
T  12396741 ggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 12406261 - 12406155
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12406261 tacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 12406162  T
Q  107 ggtgtga 113  Q
    |||||||    
T  12406161 ggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 24024506 - 24024589
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024506 ttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 4866659 - 4866553
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||| ||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4866659 tacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttcatt 4866560  T
Q  107 ggtgtga 113  Q
    |||||||    
T  4866559 ggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 2057866 - 2057763
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 129  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| |||    
T  2057866 ttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattca 2057770  T
Q  130 caacaga 136  Q
    |||||||    
T  2057769 caacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 31109761 - 31109844
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31109761 ttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 20357713 - 20357837
Alignment:
Q  9 tacactagtctagggctggttttgttgttt---gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    |||||||||||||||||| ||||||||||    ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||   ||||    
T  20357713 tacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgttt---tcat 20357808  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||||||||||| ||||||||    
T  20357809 tggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 1533608 - 1533730
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||| || |||||||||||||||||  |||||||||||  ||| ||||||||||||||||||||   |||||||||||||| ||||   |||||||    
T  1533608 tacactagactggggctggttttgttgttgttgcttggaaac--ttttttctcattgattaccactatattttgctccacacatctttgt---tttcatt 1533702  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||| ||||||| ||||||||    
T  1533703 ggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 19992241 - 19992135
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || |||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||    
T  19992241 tacactagcttagggctgtttgttgttgtaagcttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatttcatt 19992142  T
Q  107 ggtgtga 113  Q
    |||||||    
T  19992141 ggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 21812395 - 21812501
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || |||||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||||||||    
T  21812395 tacactagcttagggctgtttgttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcatt 21812494  T
Q  107 ggtgtga 113  Q
    |||||||    
T  21812495 ggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 21645940 - 21645818
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||| ||||||||| ||||||||||  |||||||| ||  |||   ||||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  21645940 tacactagactagggctgtttttgttgttgttgcttggagacacttta--ctcatagattaccactcccttttgctccacacatctttgttta---catt 21645846  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||| ||||||| ||||||||    
T  21645845 ggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  59 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 134  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  59 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 138  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 16879970 - 16879894
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16879970 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 16884826 - 16884750
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16884826 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16884750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 24261511 - 24261587
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24261511 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 24266390 - 24266466
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24266390 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 11856901 - 11856795
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11856901 tacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 11856802  T
Q  107 ggtgtga 113  Q
    |||||||    
T  11856801 ggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 14737732 - 14737838
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14737732 tacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcatt 14737831  T
Q  107 ggtgtga 113  Q
    |||||||    
T  14737832 ggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 14742591 - 14742697
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14742591 tacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcatt 14742690  T
Q  107 ggtgtga 113  Q
    |||||||    
T  14742691 ggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 22010875 - 22010958
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010875 ttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 6438429 - 6438324
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattg 107  Q
    ||||||||  |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438429 tacactagcttagggctgtttgttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcattgtttatttcattg 6438330  T
Q  108 gtgtga 113  Q
    ||||||    
T  6438329 gtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 28184434 - 28184325
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccattt--gttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 103  Q
    |||||||||||||||||| |||  ||||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28184434 tacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatttc 28184335  T
Q  104 attggtgtga 113  Q
    ||||||||||    
T  28184334 attggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 28155749 - 28155832
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||| ||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155749 ttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 5674934 - 5675057
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||| ||||||||||||||||||||  ||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||||   |||||    
T  5674934 tacactagactagggctggttttgttgttgttgcttgggaaactttt-tactctttgattaccactatcttttgctccacacatctttgttt---tcatt 5675029  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||| ||||||| ||||||||    
T  5675030 ggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 30125960 - 30126084
Alignment:
Q  9 tacactagtctagggctggttttgttgt---ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    |||||||||||||||||| |||||||||   | ||||||| ||||||||  ||||| ||||| ||||| | ||||||||||||||| ||||||   ||||    
T  30125960 tacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacacatctttgttt---tcat 30126055  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||| ||||||||||| ||||||||    
T  30126056 tggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 6005324 - 6005239
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6005324 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 5343387 - 5343322
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 95  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  5343387 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 33330625 - 33330690
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 95  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33330625 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 33336122 - 33336207
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| | |||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336122 ttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 16838651 - 16838566
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| ||||| |  |||||||  ||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16838651 ttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  59 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

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Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 22173350 - 22173456
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22173350 tacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcatt 22173449  T
Q  107 ggtgtga 113  Q
    |||||||    
T  22173450 ggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 7167174 - 7167049
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||    
T  7167174 tacactagtctagggctg-ttttgttgttgttgcttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttgttt--ttcatt 7167079  T
Q  107 ggtgtgagtttcaaccggaatcacaacaga 136  Q
    ||||||||||||||||||| ||||||||||    
T  7167078 ggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 18656338 - 18656256
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  18656338 ttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 2671752 - 2671876
Alignment:
Q  9 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    |||||||| ||||||||| ||||||||||   |||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   ||||||    
T  2671752 tacactagactagggctgtttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgt---tttcat 2671847  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||| ||||||| ||||||||    
T  2671848 tggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 40372986 - 40373085
Alignment:
Q  31 tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcac 130  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||    
T  40372986 tgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcac 40373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 8477295 - 8477170
Alignment:
Q  9 tacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    ||||||||||||||||||||||||||||  |||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||   |||||||    
T  8477295 tacactagtctagggctggttttgttgttgttgcttgggaaac-tttttactctttgattaccactatcttttgctccacacatctttgt---tttcatt 8477200  T
Q  107 ggtgtgagtttca-accggaatcacaacag 135  Q
    ||||||||||| | |||||| |||||||||    
T  8477199 ggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 8739254 - 8739354
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 129  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  8739254 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 8739349  T
Q  130 caaca 134  Q
    |||||    
T  8739350 caaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 9091492 - 9091592
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 129  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  9091492 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 9091587  T
Q  130 caaca 134  Q
    |||||    
T  9091588 caaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 8512122 - 8512037
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512122 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 8517002 - 8516917
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517002 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 28504022 - 28504145
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||| ||||||| ||||||||||  |||||||||||||||| ||||||| ||||| ||||| |  ||||||||||||||||||||   ||||||    
T  28504022 tacactagtcaagggctg-ttttgttgttgttgcttggaaaccattt-ttctcatagattatcactaccttttgctccacacatcattgtt--attcatt 28504117  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||   |||||| ||||||||    
T  28504118 ggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 2677266 - 2677351
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  ||||||| |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677266 ttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 2673110 - 2673195
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  ||||||  |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673110 ttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 10207840 - 10207755
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207840 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 44312802 - 44312885
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312802 ttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 11099093 - 11099219
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  11099093 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 11099189  T
Q  107 ggtgtgagtttcaaccggaatcacaacaga 136  Q
    ||||||||||||||||||| ||||||||||    
T  11099190 ggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 32246714 - 32246607
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcat 105  Q
    |||||||||||||| ||| |||  ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  32246714 tacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttcat 32246615  T
Q  106 tggtgtga 113  Q
    ||||||||    
T  32246614 tggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 39812166 - 39812250
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39812166 ttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 14291419 - 14291295
Alignment:
Q  9 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    |||| ||||||||||||| ||||||||||   |||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   ||||||    
T  14291419 tacattagtctagggctgtttttgttgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcat 14291324  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||| ||||||| ||||||||    
T  14291323 tggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 9296567 - 9296691
Alignment:
Q  9 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    |||||||| ||||||||| ||||||||||   |||||||||||||||| | ||||| ||||||||||| |  |||||||||||||| ||||||   ||||    
T  9296567 tacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgttt---tcat 9296662  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||| ||||||| ||||||||    
T  9296663 tggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 19344327 - 19344243
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19344327 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 19349185 - 19349101
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19349185 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 25403565 - 25403443
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25403565 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25403471  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||||||||||| ||||||||    
T  25403470 ggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 25398427 - 25398305
Alignment:
Q  9 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25398427 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25398333  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||||||| || ||||||||    
T  25398332 ggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 25445246 - 25445352
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  25445246 tacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttcatt 25445345  T
Q  107 ggtgtga 113  Q
    |||||||    
T  25445346 ggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 39445428 - 39445322
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  39445428 tacactagcttagggctgtttgttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttcatt 39445329  T
Q  107 ggtgtga 113  Q
    |||||||    
T  39445328 ggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 44024029 - 44024135
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  44024029 tacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttcatt 44024128  T
Q  107 ggtgtga 113  Q
    |||||||    
T  44024129 ggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  35 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 41398144 - 41398060
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398144 ttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 1055168 - 1055274
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || |||||||  ||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  1055168 tacactagcttagggctgtttgttgttgtaagcttggaagacatttgttcacattgattatcactatcacttgctccacacatcattggtttatttcatt 1055267  T
Q  107 ggtgtga 113  Q
    |||||||    
T  1055268 ggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 43988644 - 43988709
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 95  Q
    |||||||| |||||||| ||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  43988644 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 24787564 - 24787624
Alignment:
Q  37 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 98  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787564 ttgcttggaaaccattt-tgctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 24202932 - 24203054
Alignment:
Q  9 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 106  Q
    ||||||||| |||||||| |||  ||||||||||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| ||||||   |||||    
T  24202932 tacactagtttagggctgttttgttgttgtttgcttggagacacttta--cacatagattaccactcccttttgctccacacatctttgttt---tcatt 24203026  T
Q  107 ggtgtgagtttcaaccggaatcacaaca 134  Q
    ||||||||||| ||||||| ||||||||    
T  24203027 ggtgtgagttttaaccggattcacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  78 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  35 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 291 - 185
Alignment:
Q  9 tacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcatt 106  Q
    ||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||    
T  291 tacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttcatt 192  T
Q  107 ggtgtga 113  Q
    |||||||    
T  191 ggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 9818 - 9902
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9818 ttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 65 - 143
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    ||||||||| |||||| |||||||| ||||||||||||      ||||||||||||||||||||| |||||||| ||||||||||    
T  65 ttgttgtttacttggagaccatttgctctcattgatta------tcacttgctccacacatcattggtttatttaattggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 404 - 528
Alignment:
Q  11 cactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattg 107  Q
    ||||||| |||||||| |||| ||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||   ||||||||    
T  404 cactagtttagggctgttttttgttgttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttgt---tttcattg 500  T
Q  108 gtgtgagtttcaaccggaatcacaacag 135  Q
    |||||||||| ||  ||| |||||||||    
T  501 gtgtgagttttaaatggattcacaacag 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  52 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 113  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 19343 - 19428
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  19343 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 14497 - 14573
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  14497 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 14573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 149134 - 149219
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  149134 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 149219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 2429 - 2514
Alignment:
Q  30 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||| |||||||  |||||||  ||||| ||||| |  |||||||||||||||||||||||| |||||| ||||||||||||    
T  2429 ttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtga 2514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 24208 - 24331
Alignment:
Q  9 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 105  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||    
T  24208 tacactagtctagggctggtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cat 24302  T
Q  106 tggtgtgagtttcaaccggaatcacaaca 134  Q
    |||||||||||| ||||||| ||||||||    
T  24303 tggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  59 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 134  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 182152 - 182228
Alignment:
Q  39 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 113  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  182152 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 182228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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