View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15639_high_9 (Length: 341)
Name: NF15639_high_9
Description: NF15639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15639_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 89 - 322
Target Start/End: Original strand, 35475571 - 35475811
Alignment:
| Q |
89 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacannnnnnnnnaatacgataccaacttattatccctctcnnnnnnn |
188 |
Q |
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| T |
35475571 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctcaaaaaaa |
35475670 |
T |
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| Q |
189 |
nnn-------gaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactgctgctttatttgtccccct |
281 |
Q |
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| T |
35475671 |
aaaaacaaaagaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactactgctttatttgtccccct |
35475770 |
T |
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| Q |
282 |
cacgttcccatatttgaactcaaaatggttgtgatgatgtc |
322 |
Q |
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| T |
35475771 |
cacgttcccatatttgaactcacaatggttgtgatgatgtc |
35475811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 35475046 - 35475084
Alignment:
| Q |
64 |
ttagattagattatataccactctcaagtcaataatctt |
102 |
Q |
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| T |
35475046 |
ttagattagattatataccactctcaagtcaataatctt |
35475084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 35474991 - 35475029
Alignment:
| Q |
5 |
catgcacatgctagatgaatttgtggtgtatgcaaaatg |
43 |
Q |
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| T |
35474991 |
catgcacatgttagatgaatttgtggtgtatgcaaaatg |
35475029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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