View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_high_13 (Length: 265)
Name: NF1563_high_13
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 22816940 - 22816707
Alignment:
| Q |
17 |
aattctcagcatccattgctctttcaattacacaattatcaccctcttcccatctgacacaattattagtttaacctttctttccatgctgatannnnnn |
116 |
Q |
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| T |
22816940 |
aattctcagcatccatt-ctctttcaattacacaattatcaccctcttcccatcttacacaattattagtttaacctttctttccatactgagattttt- |
22816843 |
T |
|
| Q |
117 |
ngggtagcacggctccattccagtcactcgttaatctcaaataattcttagggtgcatcaagcaatacctatagtatctcttttagtcacatttgcgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22816842 |
--ggtagcacggctccattccagtcactcgttaatctcaaataattcttagggtgcatcaagcaatacctatagcatctcttttagtcacatttgcgtaa |
22816745 |
T |
|
| Q |
217 |
atactacctgaccgaaatgccattccaattccattctt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22816744 |
gtactacctgaccgaaatgccattccaattccattctt |
22816707 |
T |
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