View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_high_16 (Length: 249)
Name: NF1563_high_16
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 49700976 - 49700739
Alignment:
| Q |
1 |
agaaactgcttaactagtataactaaattgaaagcannnnnnncttcataaaagcagtaatgaatgatgtataaaacagctttaattggaaacatatctt |
100 |
Q |
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| T |
49700976 |
agaaactgcttaactagtataactaaattgaaagcatttttttcttcataaaagcagtaatgaatgatgtataaaacagctttaattggaaacatatctt |
49700877 |
T |
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| Q |
101 |
atcaaaaaataaaatgaagtaagagattaatggggtatagtttcttaccgcggcaccggtgacaaaaacataaaagtctgttggtgcttcattatccaaa |
200 |
Q |
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| T |
49700876 |
atcaaaaaataaaatgaagtaagagattaatggggtatagtttcctaccgcggcaccggtgacaaaaatataaaagtctgttggtgcttcattatccaaa |
49700777 |
T |
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| Q |
201 |
atcacatcttcctttggaggaaaatactccgccttcat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49700776 |
atcacatcttcctttggaggaaaatactccgccttcat |
49700739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 2242434 - 2242501
Alignment:
| Q |
170 |
ataaaagtctgttggtgcttcattatccaaaatcacatcttcctttggaggaaaatactccgccttca |
237 |
Q |
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||||||||||||||||| |||||| | ||| | ||||||||||||||||||||| |||| ||||||| |
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| T |
2242434 |
ataaaagtctgttggtgattcattctgcaagactacatcttcctttggaggaaaaaactcagccttca |
2242501 |
T |
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