View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_high_21 (Length: 236)
Name: NF1563_high_21
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 232
Target Start/End: Original strand, 25763424 - 25763598
Alignment:
| Q |
55 |
tttcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccc |
154 |
Q |
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|||||| |||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| ||| || | | | |||||| |||| ||||| |
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| T |
25763424 |
tttcaatctcaccattatagaacatagaaatgaaatataactctcttaacgttttatctttggctagaaaaccgctatatacacttaatcctgctggcc- |
25763522 |
T |
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| Q |
155 |
tcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatataga |
232 |
Q |
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||||||||| |||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
25763523 |
--ttcttggaaattcacccaatacttcagcctttggaggtccattagttgagtctttaagatcataaaccaatataga |
25763598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 25746931 - 25747088
Alignment:
| Q |
68 |
attatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctcttcttggaact |
167 |
Q |
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||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| | | | |||| ||| || ||||| ||||||||| | |
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| T |
25746931 |
attatagtacatagaaatgaagtataactctcttaacgttttatctttggctagaaaactgatatatgaacttgaccttgctggcc---ttcttggaaat |
25747027 |
T |
|
| Q |
168 |
tcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaata |
228 |
Q |
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| T |
25747028 |
ttagccaacacttcagcctttggaggtccattagtggagtctttcagatcataaaccaata |
25747088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 25755450 - 25755648
Alignment:
| Q |
28 |
tgaaacgttcagagaaaacacgtcgtctttcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataaca |
127 |
Q |
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| T |
25755450 |
tgaaacggtcggagacaacacgttgagtttcaatctcacaattatagaacatagaaatgaagtataactctcttaacgttttatctttagctagaaaaat |
25755549 |
T |
|
| Q |
128 |
gccaaacatacttaaccctgatggccctcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaat |
227 |
Q |
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|| | | |||| | |||| ||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||| |
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| T |
25755550 |
gcaatatgaacttgatcctgccggca---ttcttggaaattcagccaacacttgagccttcggaggtccattagtggagtctttcagatcataaaccaat |
25755646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 25733037 - 25733209
Alignment:
| Q |
57 |
tcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctc |
156 |
Q |
| |
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|||| |||| |||||||||||| | ||||| ||||||||||||||| ||||| |||||||||||| ||| || | | ||||| | |||| | || ||| |
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| T |
25733037 |
tcaatctcaccattatagaacacataaatgaggtataactctcttaacgttttatctttggctagaaaactgctatatatactcgatcctgctagcgctc |
25733136 |
T |
|
| Q |
157 |
ttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatataga |
232 |
Q |
| |
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|| |||| |||||| |||||||||| ||| ||||| |||| |||| |||||||||||||||||||| ||||| |
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| T |
25733137 |
tt---ggaagttcagctaacacttcaggcttccgaggtgcattggtggaatctttaagatcataaaccaaaataga |
25733209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 25740738 - 25740910
Alignment:
| Q |
57 |
tcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctc |
156 |
Q |
| |
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|||| |||| |||||||||||| | ||||| ||||||||||||||| |||| |||||||||||| ||| || | ||||| | |||| |||| ||| |
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| T |
25740738 |
tcaatctcaccattatagaacacagaaatgaggtataactctcttaacattttatctttggctagaaaactgctatgtatactcgatcctgctggcgctc |
25740837 |
T |
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| Q |
157 |
ttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatataga |
232 |
Q |
| |
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|| |||| |||||| |||||||||||||| ||||| |||| |||| |||||||||||||||||||| ||||| |
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| T |
25740838 |
tt---ggaagttcagctaacacttcagccttccgaggtgcattggtggaatctttaagatcataaaccaaaataga |
25740910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 30149374 - 30149315
Alignment:
| Q |
173 |
caacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatataga |
232 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30149374 |
caacactttagcctttggaggtccattaatggagtctttgagatcataaaccaatataga |
30149315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 30155706 - 30155647
Alignment:
| Q |
173 |
caacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatataga |
232 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30155706 |
caacactttagcctttggaggtccattaatggagtctttgagatcataaaccaatataga |
30155647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 30154113 - 30154058
Alignment:
| Q |
173 |
caacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaata |
228 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||| |
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| T |
30154113 |
caacactttagcctttggaggtccattaacggagtctttgagatcataaacgaata |
30154058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 8294911 - 8294851
Alignment:
| Q |
172 |
ccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatataga |
232 |
Q |
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||||||||| ||| |||||||||||||| |||||||||| ||||||||||| || ||||| |
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| T |
8294911 |
ccaacactttagcttttggaggtccatttgtggagtctttgagatcataaactaaaataga |
8294851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 16489767 - 16489860
Alignment:
| Q |
135 |
atacttaaccctgatggccctcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagt |
234 |
Q |
| |
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|||||| | |||| ||||| ||||||| ||| |||| ||||||| || |||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
16489767 |
atacttgatcctggtggccttcttcttagaagttcaaccaacacctctgcctttggaggt-------tggagtctttaagatcataaaccaatatcgagt |
16489859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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