View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_high_6 (Length: 404)
Name: NF1563_high_6
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 182 - 368
Target Start/End: Complemental strand, 43354844 - 43354658
Alignment:
| Q |
182 |
gaaagaaaaggcatttaaatatttacctaatttgaaatctaaatgtactgatacatctgattgttaaatatacagtaagtaagattctccataaataagc |
281 |
Q |
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| T |
43354844 |
gaaagaaaaggcatttaaatatttacctaatttgaaatctaaatgtactgatacatctgattgttaaatatacagtaagtaagattctccataaatgagc |
43354745 |
T |
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| Q |
282 |
tttccttacacgggacctctattgttttgcaaggacagtgagcctccgatttaggaatttatannnnnnnaggaaaggaagaatttg |
368 |
Q |
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| T |
43354744 |
tttccttacacgggacctctattgttttgcaaggacagtgagcctccgatttaggaatttatatttttttaggaaaggaagaatttg |
43354658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 43355012 - 43354915
Alignment:
| Q |
14 |
attatactaatttttaactaataaacaatattcaatattcactattcttcttttttnnnnnnnttattccatattcactattatgattcatgaataat |
111 |
Q |
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| T |
43355012 |
attatactaatttttaactaataaacaatattcaatattcactattcttcttttttaaaaaaattattccatattcactattatgattcatgaataat |
43354915 |
T |
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