View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_high_7 (Length: 389)
Name: NF1563_high_7
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_high_7 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 36357479 - 36357135
Alignment:
| Q |
1 |
agtcaagcgtggggaaaacctccatgaaaaatttgacgcaaatacatttatgatctatacatgctaacacaatacttaatattgtaagaaatataaaata |
100 |
Q |
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| T |
36357479 |
agtcaagcgtggggaaaacctccatgaaaaattagacgca---------------tatacatgctaacacaatacttaatattgtaagaaatataaaata |
36357395 |
T |
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| Q |
101 |
atgaatgaccttatagtcttaccatgaaataatattattagtatttataagattgatgttattacatcacacataattaatgtaactctctctcgagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36357394 |
atgaatgaccttatagtcttaccatgaaataatattattagtatttataagattgatgttattacatcacacataattaatgtaactc--tctcgagata |
36357297 |
T |
|
| Q |
201 |
atcataattctcaaactttgtatttgtccatcatttccttcgtcaatttaaattggtgtcacaattttctatttttggatgtcaca----ataagtagnn |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
36357296 |
atcataattctcaaactttgtatttgtccatcatttccttcgtcaatttaaattggtgtcacaattttctttttttggatgtcacaatatataagtag-a |
36357198 |
T |
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| Q |
297 |
nnnnnntatataaatgacacaaatcttaaataacaataaaattgtctcgttgaaatgattcaa |
359 |
Q |
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| T |
36357197 |
aaaaaatatataaatgacacaaatcttaaataacaataaaattgtctcattgaaatgattcaa |
36357135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 39659629 - 39659685
Alignment:
| Q |
304 |
atataaatgacacaaatcttaaataacaataaaattgtctcgttgaaatgattcaac |
360 |
Q |
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| T |
39659629 |
atataaatgacagaaatcctaaacaaaaataaaattgtcaagttgaaatgattcaac |
39659685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 2536 - 2592
Alignment:
| Q |
304 |
atataaatgacacaaatcttaaataacaataaaattgtctcgttgaaatgattcaac |
360 |
Q |
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| T |
2536 |
atataaatgactgaaatcctaaataataacaaaattgcctcgttgaaataattcaac |
2592 |
T |
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