View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1563_high_8 (Length: 367)
Name: NF1563_high_8
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 13475720 - 13475894
Alignment:
| Q |
14 |
gcagagaaatacgagaatgataagaataaggaaaattacactcacctcccatgagttctattaaaaggatacagactttaggtaatgaaaatgcgacttc |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
13475720 |
gcagagaaatacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagactttaggtaatgaaaatgcgacttc |
13475819 |
T |
|
| Q |
114 |
tagttcgttacttcgttgtctgtcattactatcaaaggttcatctaaaactcaagtgccgacttcaggtgatgaa |
188 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
13475820 |
tagttcgtttcttcgttgtctatcattactatcaaaggttcatctaaaactcaagtgcagacttcaggtaatgaa |
13475894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 14020402 - 14020229
Alignment:
| Q |
13 |
agcagagaaatacgagaatgataagaataaggaaaattacactcacctcccatgagttctattaaaaggatacagactttaggtaatgaaaatgcgactt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||||| |
|
|
| T |
14020402 |
agcagagaaatacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa--atacggacttcaggtaatgaaaatgtgactt |
14020305 |
T |
|
| Q |
113 |
ctagttcgttacttcgttgtctgtcattactatcaaaggttcatctaaaactcaagtgccgacttcaggtgatgaa |
188 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
14020304 |
ctagttcattccttcgttgtctgtcgttactatcaaaggttcatctaaaactcaagtgcatacttcaggtaatgaa |
14020229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 14108593 - 14108462
Alignment:
| Q |
15 |
cagagaaatacgagaatgataagaataaggaaaattacactcacctcccatgagttctattaaaaggatacagactttaggtaatgaaaatgcgacttct |
114 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14108593 |
cagagaaatacgaaaatgataggaataatgaaaattacactcacctcccataagttctattaaaaggatacagacttcaggtaatgaaaatgcgacttct |
14108494 |
T |
|
| Q |
115 |
agttcgttacttcgttgtctgtcattactatc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14108493 |
agttcgttacttcgttgtctgtcattactatc |
14108462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 14108451 - 14108390
Alignment:
| Q |
184 |
atgaacgtaggatgaaacaggctggggtagaatctaccacatcaacatgagaatcgataaag |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14108451 |
atgaacgtaggatgaaacaggctggggtagaatctaccacatcaacatgagaatcgataaag |
14108390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 13476130 - 13476192
Alignment:
| Q |
289 |
aagaaagaaaataaaattttcttatctctgtcagcaaaaaatcaagtggtagattatacctga |
351 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
13476130 |
aagaaagaaaattaaattttcttatccctctcagcaaaaactcaagtggtagattatacctga |
13476192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 24786909 - 24786788
Alignment:
| Q |
131 |
gtctgtcattactatcaaaggttcatctaaaactcaagtgccgacttcaggtgatgaacgtaggatgaaacaggctggggtagaatctaccacatcaaca |
230 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||| |||| ||||| | ||| ||||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
24786909 |
gtctgtcattactatcaaatgttcatataaaacgcaagtgtagactgcaggtaaagaaaataggagggaacgggctggggtagaacctaccacatcaaca |
24786810 |
T |
|
| Q |
231 |
tgagaatcgataaagacagcaa |
252 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
24786809 |
ggagaaccgataaagacagcaa |
24786788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University