View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1563_low_1 (Length: 756)

Name: NF1563_low_1
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1563_low_1
NF1563_low_1
[»] chr2 (2 HSPs)
chr2 (16-746)||(12774658-12775389)
chr2 (16-403)||(28267398-28267784)
[»] chr7 (5 HSPs)
chr7 (13-413)||(48654081-48654478)
chr7 (286-413)||(22077633-22077758)
chr7 (294-328)||(41874437-41874471)
chr7 (272-405)||(21491605-21491740)
chr7 (128-189)||(48576605-48576666)
[»] chr1 (3 HSPs)
chr1 (59-362)||(18473834-18474133)
chr1 (272-372)||(9537465-9537565)
chr1 (286-413)||(35762175-35762302)
[»] chr4 (2 HSPs)
chr4 (272-656)||(28969292-28969674)
chr4 (302-402)||(41868580-41868678)
[»] chr6 (3 HSPs)
chr6 (158-413)||(13777096-13777349)
chr6 (13-162)||(13773667-13773815)
chr6 (288-366)||(24992461-24992538)
[»] chr3 (2 HSPs)
chr3 (522-746)||(16974916-16975140)
chr3 (272-414)||(5004829-5004971)
[»] chr5 (1 HSPs)
chr5 (52-159)||(42861091-42861198)
[»] chr8 (1 HSPs)
chr8 (602-746)||(35838771-35838914)
[»] scaffold0413 (1 HSPs)
scaffold0413 (309-413)||(8840-8944)


Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 16 - 746
Target Start/End: Original strand, 12774658 - 12775389
Alignment:
Q  16 aatatatagccacatatatgctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttatta 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  12774658 aatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactatgataaatttaagcatttatta 12774757  T
Q  116 atttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcaca-ttatcatatttttcctttcgttggt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  12774758 atttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttataatactcacaattatcatatttttcctttctttggt 12774857  T
Q  215 ttttcaaaaacaaattctaacatttctttccta-catcacaaaaacaaataaagcat----aaacttttgtaaactgttaaatattaccacctaaatata 309  Q
    |||||||||| |   |||||||||||||| ||| |||||||||||||||||||||||    ||  |||||||||||||||||||||||||||||||||||    
T  12774858 ttttcaaaaaaa---tctaacatttcttttctaacatcacaaaaacaaataaagcatgcataattttttgtaaactgttaaatattaccacctaaatata 12774954  T
Q  310 tattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgtatatgtacgtatgggaaaaaagtcctt 409  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||  | ||||||||| |||||| ||||    
T  12774955 tattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtat--ggacgtatggggaaaaagccctt 12775052  T
Q  410 accttttaggtacttttccttcctagtgcatctaggaacgagtctcgactttgcagctacaatacacacgcaactcctctaactagagacattttctgat 509  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12775053 accttttaggtacttttccttccaagtgcatctacgaacgagtctcgactttgcagctacaatacacacgcaactcctctaactagagacattttctgat 12775152  T
Q  510 gatagaaatttagaaaacgaagaatcatgtgactcgatccaactcccaaaaatcaacacaatttgacggcgaacggaggcctactcttaatcctacgtat 609  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12775153 gatagaaatttagaaaacgaagaatcatgtgacgcgatccaactcccaaaaatcaacacaatttgacggcgaatggaggcctactcttaatcctacgtat 12775252  T
Q  610 agaggcaggttcaggaaaacaaaaatggaatgaaattgtactttcataaaataagaatatgaatgaaatggaaggacatgaagtcttaataacttacacg 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12775253 agaggcaggttcaggaaaacaaaaatggaatgaaattgtactttcataaaataagaatatgaatgaaatggaaggacatgaagtcttaataacttacacg 12775352  T
Q  710 aatttgactgggaagaaatgatacgatctaattgatg 746  Q
    ||||||| |||||||||||||||||||||||||||||    
T  12775353 aatttgattgggaagaaatgatacgatctaattgatg 12775389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 28267398 - 28267784
Alignment:
Q  16 aatatatagccacatatat-gctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttatt 114  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||    
T  28267398 aatatatagccacatatattgctaaaaataacactacaagcatttttctacaggaaataatatagtcacatatatactataatagatttaaacatttatt 28267497  T
Q  115 aatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcacattatcatatttttcctttcgttggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  28267498 aatttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttacaatactcacattatcatatttttcctttctttggt 28267597  T
Q  215 ttttcaaaaacaaattctaacatttctttcct-acatcacaaaaacaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatatt 313  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28267598 ttttcaaaaa-aaaatctaacatttctttcctaacatcacaaaaacaaataaagcataaacttttgcaaactgttaaatattaccacctaaatatatatt 28267696  T
Q  314 ttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgtatatgtacgtatgggaaaaaa 403  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||| |  |||| |||||||||||||||    
T  28267697 ttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttag--tatggacgtatgggaaaaaa 28267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 48654081 - 48654478
Alignment:
Q  13 aagaatatatagccacatatatgctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacattta 112  Q
    ||||||||||  ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48654081 aagaatatatcaccacatatatgctaaaaataacaatacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacattta 48654180  T
Q  113 ttaatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcacattatcatatttttcctttcgttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||    
T  48654181 ttaatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatatttttcctctctttg 48654280  T
Q  213 gtttttcaaaaacaaattctaacatttctttcctacatcacaaaaacaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatat 312  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48654281 gtttttc-aaaacaaattctaacatttatttcctacatcacaaaaacaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatat 48654379  T
Q  313 tttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgtatatgtacgtatgggaaaaaagtccttacc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |  |||| ||||||||| |||||  |||||||    
T  48654380 tttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttag--tatggacgtatggggaaaaaacccttacc 48654477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 286 - 413
Target Start/End: Complemental strand, 22077758 - 22077633
Alignment:
Q  286 gttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgtata 385  Q
    ||||||| ||||||  ||||| |||||||||||||||||||||   || |||||||||| | ||| ||||||||| |||||||||||  ||||| |  ||    
T  22077758 gttaaattttaccatataaatttatattttagttgtttttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttag--ta 22077661  T
Q  386 tgtacgtatgggaaaaaagtccttacct 413  Q
    || || ||||||||||||| ||||||||    
T  22077660 tgaacatatgggaaaaaagcccttacct 22077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 41874471 - 41874437
Alignment:
Q  294 ttaccacctaaatatatattttagttgtttttctt 328  Q
    ||||||| |||||||||||||||||||||||||||    
T  41874471 ttaccacttaaatatatattttagttgtttttctt 41874437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 405
Target Start/End: Original strand, 21491605 - 21491740
Alignment:
Q  272 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt----tctttccaaaagacaagaatttgtacttctaattcacaacatc 367  Q
    ||||||| ||||  ||||||| ||||||  |||||  ||||||||||| ||||    ||||| |||  ||||||||| | ||| ||||||||| ||||||    
T  21491605 aacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacatc 21491704  T
Q  368 atcctgatactttgtatatgtacgtatgggaaaaaagt 405  Q
    |||||  ||||| |  |||| |||||||||||||||||    
T  21491705 atcctagtacttag--tatggacgtatgggaaaaaagt 21491740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 48576666 - 48576605
Alignment:
Q  128 agaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcaca 189  Q
    ||||||||||  || |||| |||||||||||||| ||||||| |||||| |||| |||||||    
T  48576666 agaatttcaggtactatatcatcattatttctaacatttatatccttttcataaaactcaca 48576605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 59 - 362
Target Start/End: Original strand, 18473834 - 18474133
Alignment:
Q  59 tttctccgggaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagcaaccatataatcattatttc 158  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  18473834 tttctccgggaaataata--gtcacatatatactataataaaattaaacattt--taatttatccaggaagaatttcagcaaccatataatcattatttc 18473929  T
Q  159 taagatttataccctttttataatactcacattatcatatttttcctttcgttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaaa 258  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18473930 taagatttatatcctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaaa 18474029  T
Q  259 caaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaatt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18474030 caaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttaattgtttttctttccaaaagacaagaatttgtacttctaatt 18474129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 9537465 - 9537565
Alignment:
Q  272 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcc 371  Q
    ||||||| ||||  ||||||| |||| |  ||||| ||||||||| |||||||||||  ||| |||||||||| | ||| ||||||||| ||||||||||    
T  9537465 aacttttataaaaggttaaattttacaatataaatttatattttacttgtttttcttctcaacagacaagaatctatacctctaattcataacatcatcc 9537564  T
Q  372 t 372  Q
    |    
T  9537565 t 9537565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 413
Target Start/End: Original strand, 35762175 - 35762302
Alignment:
Q  286 gttaaatattaccacctaaatatatattttagttgttt--ttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgta 383  Q
    ||||||| ||||||  |||||  |||||||||||||||  |||||| ||| | |||||||| | ||| ||||||||| ||||| |||||  ||||| |      
T  35762175 gttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttag-- 35762272  T
Q  384 tatgtacgtatgggaaaaaagtccttacct 413  Q
    |||| ||||||||| |||||| ||||||||    
T  35762273 tatggacgtatggggaaaaagcccttacct 35762302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 272 - 656
Target Start/End: Original strand, 28969292 - 28969674
Alignment:
Q  272 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcc 371  Q
    ||||||| |||| |||||||| ||||||  |||||  ||||||||||||||||||||  ||| |||||||||||| ||| ||||||||| ||||||||||    
T  28969292 aacttttataaaatgttaaattttaccatataaattaatattttagttgtttttcttctcaacagacaagaatttctacctctaattcataacatcatcc 28969391  T
Q  372 tgatactttgtatatgtacgtatgggaaaaaagtccttaccttttaggtacttttccttcctagtgcatctaggaacgagtctcgactttgcagctacaa 471  Q
    |  ||||| ||||  | ||||||| | |||||  |||||||||||   |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  28969392 tagtacttagtat--ggacgtatgaggaaaaaacccttaccttttgaatacttttccttcctagtgcatctacgaacgagtctcgactttgctgctacaa 28969489  T
Q  472 tacacacgcaactcctctaactagagacattttctgatgatagaaatttagaaaacgaagaatcatgtgactcgatccaactcccaaaaatcaacacaat 571  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||  ||    
T  28969490 tacacatgcaactcctctaactagagacattttctgacaatagaaatttagaaaacgaagaatcatgtgacgtgatccaactcccaaaattcaacaatat 28969589  T
Q  572 ttgacggcgaacggaggcctactcttaatcctacgtatagaggcaggttcaggaaaacaaaaatggaatgaaattgtactttcat 656  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||    
T  28969590 tcgacgtcgaacggaggcctactcttaatcctacgtatagaggcaggttcatgaaaacaaaaacgaaataaaattgtactttcat 28969674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 41868678 - 41868580
Alignment:
Q  302 taaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgtatatgtacgtatgggaaaa 401  Q
    ||||||||||||| | |||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||| |  |||| |||||||||||||    
T  41868678 taaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttag--tatggacgtatgggaaaa 41868581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 158 - 413
Target Start/End: Original strand, 13777096 - 13777349
Alignment:
Q  158 ctaagatttataccctttttataatactcacattatcatatttttcctttcgttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13777096 ctaagatttataccctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaa 13777195  T
Q  258 acaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaat 357  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13777196 acaaataaagcataaacttttgtaaactgttaaatattaccaacgaaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaat 13777295  T
Q  358 tcacaacatcatcctgatactttgtatatgtacgtatgggaaaaaagtccttacct 413  Q
    |||||||||||||||  || ||| | |||| ||||| ||| |||||||||||||||    
T  13777296 tcacaacatcatcctagta-tttat-tatggacgtacggggaaaaagtccttacct 13777349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 13773667 - 13773815
Alignment:
Q  13 aagaatatatagccacatatatgctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacattta 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  13773667 aagaatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactataataaaattaaa-attta 13773765  T
Q  113 ttaatttatccaggaagaatttcagcaaccatataatcattatttctaag 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13773766 ttaatttattcaggaagaatttcagcaaccatataatcattatttctaag 13773815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 24992538 - 24992461
Alignment:
Q  288 taaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacat 366  Q
    ||||| ||||||| |||| | |||||||| |||||||||||| ||||| |||||||||| ||||| ||||||| |||||    
T  24992538 taaattttaccacgtaaagaaatattttaattgtttttcttttcaaaa-acaagaatttctacttataattcataacat 24992461  T

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Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 522 - 746
Target Start/End: Complemental strand, 16975140 - 16974916
Alignment:
Q  522 gaaaacgaagaatcatgtgactcgatccaactcccaaaaatcaacacaatttgacggcgaacggaggcctactcttaatcctacgtatagaggcaggttc 621  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  16975140 gaaaacgaagaatcatgtgacgtgatccaactctcaaaaatcaacacaattcgatggcgaacggaggcctactcttaatcctacgtatagaggcaggttc 16975041  T
Q  622 aggaaaacaaaaatggaatgaaattgtactttcataaaataagaatatgaatgaaatggaaggacatgaagtcttaataacttacacgaatttgactggg 721  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16975040 aggaaaacaaaaacggaatgaaattgtactttcataaaataagaatatgaatgaaatggaaggacatgaagtcttaataacttacacgaatttgacttgg 16974941  T
Q  722 aagaaatgatacgatctaattgatg 746  Q
    |||||||||||||||||||||||||    
T  16974940 aagaaatgatacgatctaattgatg 16974916  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 414
Target Start/End: Original strand, 5004829 - 5004971
Alignment:
Q  272 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 369  Q
    ||||||| ||||  ||||||| | ||||  |||||  ||||||||||||||||  ||||| |||||||||||||| | ||| ||||||||| ||||| ||    
T  5004829 aacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataat 5004928  T
Q  370 cctgatactttgtatatgtacgtatgggaaaaaagtccttacctt 414  Q
    |||  ||||| |  || | ||||||||| |||||| |||||||||    
T  5004929 cctagtacttag--taagaacgtatggggaaaaagcccttacctt 5004971  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 42861198 - 42861091
Alignment:
Q  52 aagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagcaaccatataatca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42861198 aagcatttttctccgggaaataatatagtcacatatatactataatataattaaacatttattaatttatccaggaagaatttcagcaaccatataatca 42861099  T
Q  152 ttatttct 159  Q
    ||||||||    
T  42861098 ttatttct 42861091  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 602 - 746
Target Start/End: Complemental strand, 35838914 - 35838771
Alignment:
Q  602 ctacgtatagaggcaggttcaggaaaacaaaaatggaatgaaattgtactttcataaaataagaatatgaatgaaatggaaggacatgaagtcttaataa 701  Q
    ||||||||||||||| ||| ||||| |||||| |||||| |||||||||||| ||  ||| |||  ||||||||||| |||| | |  ||||||||| ||    
T  35838914 ctacgtatagaggcaagtttaggaagacaaaa-tggaataaaattgtacttttatggaatgagacaatgaatgaaatagaagaatagaaagtcttaacaa 35838816  T
Q  702 cttacacgaatttgactgggaagaaatgatacgatctaattgatg 746  Q
    ||||||||| || |||   |||| ||||||| || ||||||||||    
T  35838815 cttacacgagttggacaaagaaggaatgataggaactaattgatg 35838771  T

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Target: scaffold0413 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 413
Target Start/End: Complemental strand, 8944 - 8840
Alignment:
Q  309 atattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctgatactttgtatatgtacgtatgggaaaaaagtc 406  Q
    ||||||||||||||||  ||||| ||| |||||||||||| ||| ||||||||| ||||| |||||  ||||| |  || | ||||||||| |||||| |    
T  8944 atattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacataatcctagtacttag--taagaacgtatggggaaaaagcc 8847  T
Q  407 cttacct 413  Q
    |||||||    
T  8846 cttacct 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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