View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_low_13 (Length: 305)
Name: NF1563_low_13
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 8393275 - 8393545
Alignment:
| Q |
17 |
atgaacaaatataggtccaagtttacaacaaatctatgaacaaagagtgtgtgaataactttagattttagataacctacctagtttaggaaatagtaac |
116 |
Q |
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| T |
8393275 |
atgaacaaatataggtccaagtttacaacaaatctatgaacaaagagtgtgtgaataactttagattttagataacctacctagtttaggaaatagtaac |
8393374 |
T |
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| Q |
117 |
gtcatagttacctctttttatatcatatttttgacttttgataattaaagaaaatgtgatattnnnnnnnttatcaacgttataaattgtgttactaaaa |
216 |
Q |
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| T |
8393375 |
gtcatagttacctctttttatatcatatttttgacttttgataattaaagaaaatgtgatatcaaaaaaattatcaacgttataaattgtgttactaaaa |
8393474 |
T |
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| Q |
217 |
tattttttgaataaaaaacatattctcttgtttgaaaatcaaatgcttgcataactatataaacacgtgaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8393475 |
tattttttgaataaaaaacatattctcttgtttgaaaaccaaatgcttgcataactatataaacacgtgaa |
8393545 |
T |
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