View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1563_low_15 (Length: 254)

Name: NF1563_low_15
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1563_low_15
NF1563_low_15
[»] chr1 (8 HSPs)
chr1 (55-242)||(34076640-34076827)
chr1 (18-54)||(34075474-34075510)
chr1 (87-132)||(11018924-11018969)
chr1 (98-132)||(5222775-5222809)
chr1 (98-132)||(17419868-17419902)
chr1 (95-132)||(15392182-15392219)
chr1 (98-134)||(8520080-8520116)
chr1 (98-134)||(21638253-21638289)
[»] chr7 (6 HSPs)
chr7 (56-132)||(40792801-40792877)
chr7 (94-132)||(12578449-12578487)
chr7 (79-132)||(13310414-13310467)
chr7 (98-132)||(8585172-8585206)
chr7 (98-132)||(23396895-23396929)
chr7 (98-130)||(29780228-29780260)
[»] scaffold0032 (1 HSPs)
scaffold0032 (95-128)||(45349-45382)
[»] chr2 (7 HSPs)
chr2 (79-132)||(37812272-37812325)
chr2 (56-132)||(37812502-37812578)
chr2 (98-133)||(6183354-6183389)
chr2 (98-132)||(5424771-5424805)
chr2 (98-132)||(22447181-22447215)
chr2 (95-132)||(41002311-41002348)
chr2 (98-130)||(10429820-10429852)
[»] chr6 (6 HSPs)
chr6 (56-132)||(15102935-15103011)
chr6 (98-132)||(15102613-15102647)
chr6 (98-132)||(16590265-16590299)
chr6 (98-132)||(16605081-16605115)
chr6 (98-132)||(17096687-17096721)
chr6 (95-132)||(19712393-19712430)
[»] chr4 (9 HSPs)
chr4 (56-132)||(27634085-27634161)
chr4 (98-132)||(991285-991319)
chr4 (98-132)||(1922980-1923014)
chr4 (98-132)||(8559960-8559994)
chr4 (98-132)||(10390464-10390498)
chr4 (93-131)||(39910406-39910444)
chr4 (103-132)||(21646793-21646822)
chr4 (95-132)||(56511582-56511619)
chr4 (98-134)||(28395258-28395294)
[»] chr5 (4 HSPs)
chr5 (79-134)||(17129933-17129988)
chr5 (98-133)||(27760456-27760491)
chr5 (98-132)||(24125143-24125177)
chr5 (103-133)||(24125211-24125241)
[»] chr3 (7 HSPs)
chr3 (81-132)||(10758997-10759048)
chr3 (98-132)||(12800171-12800205)
chr3 (98-132)||(33909619-33909653)
chr3 (95-132)||(50057237-50057274)
chr3 (95-132)||(50057367-50057404)
chr3 (95-131)||(38422061-38422097)
chr3 (103-131)||(53981895-53981923)
[»] chr8 (6 HSPs)
chr8 (98-132)||(15010810-15010844)
chr8 (98-132)||(33435760-33435794)
chr8 (98-132)||(36039783-36039817)
chr8 (96-132)||(7621973-7622009)
chr8 (96-132)||(31767059-31767095)
chr8 (98-130)||(36037271-36037303)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 34076640 - 34076827
Alignment:
Q  55 aaatgtgtttaaaagagggggttgtcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaacacacgttaatcctaaaaattata 154  Q
    ||||||||||||||| |||||  |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  34076640 aaatgtgtttaaaagtgggggcagtcctcacttcacaaaccgattttataaggatgagttaggccccaaatttcaacacaagttaatcctaaaaattata 34076739  T
Q  155 tgcatcgtctttgatttttataaattggtaactacattctcaaaattgtaaaatgttatctaaaataatttctccattaatttatatt 242  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34076740 tgcatcgtctttgttttttataaattggtaactacattctcaaaattgtaaaatgttatctaaaataatttctccattaatttatatt 34076827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 34075474 - 34075510
Alignment:
Q  18 attgcaaaccaacagctactttacttaatattttggt 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  34075474 attgcaaaccaacagctactttacttaatattttggt 34075510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 11018924 - 11018969
Alignment:
Q  87 tcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  11018924 tcacaaatcgattttgtaaggatgagttagacctcaaatttcaaca 11018969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 5222775 - 5222809
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||||||||||||||||||| |||||||||||    
T  5222775 ttttataaggatgagttagaccctaaatttcaaca 5222809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 17419868 - 17419902
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  17419868 ttttgtaaggatgagttagaccccaaatttcaaca 17419902  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 15392182 - 15392219
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  15392182 cgattttgtaaggatgagttaggccccaaatttcaaca 15392219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 8520116 - 8520080
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaacaca 134  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  8520116 ttttgtaaagatgagttagaccccaaatttcaacaca 8520080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 21638289 - 21638253
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaacaca 134  Q
    |||| |||||||||||||| |||||||||||||||||    
T  21638289 ttttgtaaggatgagttaggccccaaatttcaacaca 21638253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 40792877 - 40792801
Alignment:
Q  56 aatgtgtttaaaagagggggttgtcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||||| ||| || ||| |||||||| |||||   ||||||| ||||||||||||||||||||||||| ||||    
T  40792877 aatgtgtttataagtggcggtagtcctcacctcacaagccgattttgtaaggatgagttagaccccaaattttaaca 40792801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 12578487 - 12578449
Alignment:
Q  94 tcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  12578487 tcgattttgtaaggatgagttagaccccaaatttcaaca 12578449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 13310467 - 13310414
Alignment:
Q  79 tcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||||||||| | || |||| |||||||||||||| |||||||||||||||    
T  13310467 tcctcacttcacaaaccggttttgtaaggatgagttaggccccaaatttcaaca 13310414  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 8585172 - 8585206
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  8585172 ttttgtaaggatgagttagaccccaaatttcaaca 8585206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 23396895 - 23396929
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  23396895 ttttgtaaggatgagttagaccccaaatttcaaca 23396929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 29780228 - 29780260
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaa 130  Q
    ||||||||||||||||||| |||||||||||||    
T  29780228 ttttataaggatgagttaggccccaaatttcaa 29780260  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 45349 - 45382
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttc 128  Q
    ||||||||||||||||||||||||||||||||||    
T  45349 cgattttataaggatgagttagaccccaaatttc 45382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 37812325 - 37812272
Alignment:
Q  79 tcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||| |||||  |||||||| |||||||||||||||||||||||| |||||    
T  37812325 tcctcacctcacaagtcgattttgtaaggatgagttagaccccaaattacaaca 37812272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 37812578 - 37812502
Alignment:
Q  56 aatgtgtttaaaagagggggttgtcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||||| ||| |||||   ||||||| |||||  |||||||| |||||||||||||| ||||||||| |||||    
T  37812578 aatgtgtttataagtgggggcaatcctcacctcacaagtcgattttgtaaggatgagttaggccccaaattacaaca 37812502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 6183389 - 6183354
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaacac 133  Q
    |||| |||||||||||||||||||||||||||||||    
T  6183389 ttttgtaaggatgagttagaccccaaatttcaacac 6183354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 5424805 - 5424771
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  5424805 ttttgtaaggatgagttagaccccaaatttcaaca 5424771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 22447181 - 22447215
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  22447181 ttttgtaaggatgagttagaccccaaatttcaaca 22447215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 41002311 - 41002348
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||||||||||||||||  |||||||||||||||    
T  41002311 cgattttataaggatgagttatgccccaaatttcaaca 41002348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 10429820 - 10429852
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaa 130  Q
    |||| ||||||||||||||||||||||||||||    
T  10429820 ttttgtaaggatgagttagaccccaaatttcaa 10429852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 15103011 - 15102935
Alignment:
Q  56 aatgtgtttaaaagagggggttgtcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||||| ||| |||||   | ||||||||||||  || |||| ||||||||||||||||| ||||||||||||    
T  15103011 aatgtgtttataagcgggggcaattctcacttcacaggccggttttgtaaggatgagttagaccacaaatttcaaca 15102935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 15102647 - 15102613
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  15102647 ttttgtaaggatgagttagaccccaaatttcaaca 15102613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 16590265 - 16590299
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  16590265 ttttgtaaggatgagttagaccccaaatttcaaca 16590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 16605115 - 16605081
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  16605115 ttttgtaaggatgagttagaccccaaatttcaaca 16605081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 17096721 - 17096687
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  17096721 ttttgtaaggatgagttagaccccaaatttcaaca 17096687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 19712430 - 19712393
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  19712430 cgattttgtaaggatgagttaggccccaaatttcaaca 19712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 27634161 - 27634085
Alignment:
Q  56 aatgtgtttaaaagagggggttgtcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||||| ||| |||||   ||||||| ||||| | ||||||| |||||||||||||| ||||||||| |||||    
T  27634161 aatgtgtttataagtgggggcaatcctcacctcacaaaccgattttgtaaggatgagttaggccccaaattacaaca 27634085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 991285 - 991319
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  991285 ttttgtaaggatgagttagaccccaaatttcaaca 991319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 1923014 - 1922980
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||||||||||| ||||||||||||||||||    
T  1923014 ttttataaggatgagtcagaccccaaatttcaaca 1922980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 8559994 - 8559960
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  8559994 ttttgtaaggatgagttagaccccaaatttcaaca 8559960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 10390498 - 10390464
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  10390498 ttttgtaaggatgagttagaccccaaatttcaaca 10390464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 39910444 - 39910406
Alignment:
Q  93 atcgattttataaggatgagttagaccccaaatttcaac 131  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  39910444 atcgattttgtaaggatgagttagaccccaaattacaac 39910406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 21646822 - 21646793
Alignment:
Q  103 taaggatgagttagaccccaaatttcaaca 132  Q
    ||||||||||||||||||||||||||||||    
T  21646822 taaggatgagttagaccccaaatttcaaca 21646793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 56511582 - 56511619
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  56511582 cgattttgtaaggatgagttaggccccaaatttcaaca 56511619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 28395258 - 28395294
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaacaca 134  Q
    |||| |||||||||||||| |||||||||||||||||    
T  28395258 ttttgtaaggatgagttaggccccaaatttcaacaca 28395294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 17129988 - 17129933
Alignment:
Q  79 tcctcacttcacagatcgattttataaggatgagttagaccccaaatttcaacaca 134  Q
    |||||||||| ||  ||||||| |||| |||||||||||||| |||||||||||||    
T  17129988 tcctcacttcgcaagtcgatttcataatgatgagttagacccaaaatttcaacaca 17129933  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 27760456 - 27760491
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaacac 133  Q
    |||| |||||||||||||||||||||||||||||||    
T  27760456 ttttgtaaggatgagttagaccccaaatttcaacac 27760491  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 24125143 - 24125177
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  24125143 ttttgtaaggatgagttagaccccaaatttcaaca 24125177  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 133
Target Start/End: Original strand, 24125211 - 24125241
Alignment:
Q  103 taaggatgagttagaccccaaatttcaacac 133  Q
    |||||||||||||||||||||||||||||||    
T  24125211 taaggatgagttagaccccaaatttcaacac 24125241  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 10759048 - 10758997
Alignment:
Q  81 ctcacttcacagatcgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||| |||||  ||| |||| ||||||||||||||||||||||||||||||    
T  10759048 ctcacctcacaagtcggttttgtaaggatgagttagaccccaaatttcaaca 10758997  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 12800171 - 12800205
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||||| ||||||||||||||||||||||||||    
T  12800171 ttttataaagatgagttagaccccaaatttcaaca 12800205  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 33909653 - 33909619
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  33909653 ttttgtaaggatgagttagaccccaaatttcaaca 33909619  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 50057237 - 50057274
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  50057237 cgattttgtaaggatgagttaggccccaaatttcaaca 50057274  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 50057367 - 50057404
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  50057367 cgattttgtaaggatgagttaggccccaaatttcaaca 50057404  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 38422061 - 38422097
Alignment:
Q  95 cgattttataaggatgagttagaccccaaatttcaac 131  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  38422061 cgattttgtaaggttgagttagaccccaaatttcaac 38422097  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 53981895 - 53981923
Alignment:
Q  103 taaggatgagttagaccccaaatttcaac 131  Q
    |||||||||||||||||||||||||||||    
T  53981895 taaggatgagttagaccccaaatttcaac 53981923  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 15010844 - 15010810
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    ||||||||||||||||||| |||||||||||||||    
T  15010844 ttttataaggatgagttaggccccaaatttcaaca 15010810  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 33435760 - 33435794
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  33435760 ttttgtaaggatgagttagaccccaaatttcaaca 33435794  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 36039817 - 36039783
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  36039817 ttttgtaaggatgagttagaccccaaatttcaaca 36039783  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 7621973 - 7622009
Alignment:
Q  96 gattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7621973 gattttgtaaggatgagttaggccccaaatttcaaca 7622009  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 31767059 - 31767095
Alignment:
Q  96 gattttataaggatgagttagaccccaaatttcaaca 132  Q
    |||||| |||||||||||||| |||||||||||||||    
T  31767059 gattttgtaaggatgagttaggccccaaatttcaaca 31767095  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 36037271 - 36037303
Alignment:
Q  98 ttttataaggatgagttagaccccaaatttcaa 130  Q
    |||| ||||||||||||||||||||||||||||    
T  36037271 ttttgtaaggatgagttagaccccaaatttcaa 36037303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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