View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1563_low_18 (Length: 247)

Name: NF1563_low_18
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1563_low_18
NF1563_low_18
[»] chr5 (8 HSPs)
chr5 (28-240)||(37402464-37402676)
chr5 (144-240)||(37531698-37531794)
chr5 (144-240)||(37592802-37592898)
chr5 (152-240)||(37695201-37695289)
chr5 (144-214)||(37638344-37638414)
chr5 (144-240)||(37710105-37710201)
chr5 (144-214)||(37822502-37822572)
chr5 (68-147)||(37394479-37394557)
[»] chr4 (3 HSPs)
chr4 (68-138)||(16844624-16844694)
chr4 (144-214)||(16844488-16844559)
chr4 (26-58)||(16844731-16844763)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 37402676 - 37402464
Alignment:
Q  28 aaaagttgaagcaattaagtcttgagcattttatagtataaattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402676 aaaagttgaagcaattaagtcttgagcattttatagtataaattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtat 37402577  T
Q  128 taaaagatatagtatataattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37402576 taaaagatatagtatataattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttg 37402477  T
Q  228 tttgttcttttca 240  Q
    |||||||||||||    
T  37402476 tttgttcttttca 37402464  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 37531698 - 37531794
Alignment:
Q  144 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttttttgttcttttca 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37531698 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttca 37531794  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 37592802 - 37592898
Alignment:
Q  144 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttttttgttcttttca 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37592802 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttca 37592898  T

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Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 37695201 - 37695289
Alignment:
Q  152 aacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttttttgttcttttca 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37695201 aacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttca 37695289  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 37638344 - 37638414
Alignment:
Q  144 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgc 214  Q
    ||||||||||||| |||||||||||||||||||| ||   |||| ||||||||||||||||||||||||||    
T  37638344 taattacaaacagttgtaactacatatttgaaaagaccctcatccaattaattcattcttctgcgatttgc 37638414  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 37710105 - 37710201
Alignment:
Q  144 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttttttgttcttttca 240  Q
    ||||||||||||| | || ||||||||||||||| || | |||| ||||||||||||||||||||||||||   |  |||||| |||||||||||||    
T  37710105 taattacaaacagttatatctacatatttgaaaacaccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttca 37710201  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 37822502 - 37822572
Alignment:
Q  144 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgc 214  Q
    ||||||||||||| |||||||||||||||||||| ||   |||| ||||||||||||||| ||||||||||    
T  37822502 taattacaaacagttgtaactacatatttgaaaagaccctcatccaattaattcattcttatgcgatttgc 37822572  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 37394557 - 37394479
Alignment:
Q  68 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatatagtatataat 147  Q
    |||| ||||||||||||| ||||||| || | ||||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  37394557 aattgatcactataaattccttatttattcatcaacttgaaatatataacacactggtactaaaagatata-tatataat 37394479  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 16844694 - 16844624
Alignment:
Q  68 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatata 138  Q
    |||| |||||||||||||||||||||||| ||||||||  ||||||||  | | |||||||||||||||||    
T  16844694 aattgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatata 16844624  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 16844559 - 16844488
Alignment:
Q  144 taattacaaacagctgtaactacatatttgaaaata-caaacatcaaattaattcattcttctgcgatttgc 214  Q
    ||||||||||||| |||| ||||||||||||||| | |   |||| |||||||||||||||| |||||||||    
T  16844559 taattacaaacagttgtatctacatatttgaaaaaaaccctcatccaattaattcattcttcggcgatttgc 16844488  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 16844763 - 16844731
Alignment:
Q  26 tcaaaagttgaagcaattaagtcttgagcattt 58  Q
    ||||||||||||||||||||||||||| |||||    
T  16844763 tcaaaagttgaagcaattaagtcttgatcattt 16844731  T

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