View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1563_low_2 (Length: 714)

Name: NF1563_low_2
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1563_low_2
NF1563_low_2
[»] chr8 (11 HSPs)
chr8 (458-714)||(30224173-30224430)
chr8 (456-714)||(5567367-5567626)
chr8 (458-714)||(25248955-25249206)
chr8 (460-664)||(3375506-3375709)
chr8 (460-711)||(31032038-31032285)
chr8 (472-714)||(6428699-6428941)
chr8 (494-689)||(3379172-3379366)
chr8 (543-654)||(36535924-36536035)
chr8 (514-576)||(14935576-14935638)
chr8 (458-511)||(5567676-5567729)
chr8 (544-607)||(29274786-29274849)
[»] chr4 (14 HSPs)
chr4 (458-714)||(7040304-7040561)
chr4 (458-714)||(23564706-23564963)
chr4 (458-714)||(18656051-18656308)
chr4 (458-646)||(23566449-23566628)
chr4 (458-638)||(52520542-52520724)
chr4 (458-638)||(52518700-52518882)
chr4 (514-642)||(3529251-3529379)
chr4 (514-642)||(23985773-23985901)
chr4 (541-703)||(54296454-54296617)
chr4 (514-711)||(52545137-52545333)
chr4 (458-647)||(3274538-3274728)
chr4 (514-614)||(24807423-24807522)
chr4 (626-711)||(56074680-56074766)
chr4 (514-564)||(18395816-18395866)
[»] chr2 (8 HSPs)
chr2 (458-714)||(29758063-29758320)
chr2 (603-689)||(8759121-8759207)
chr2 (469-637)||(20516053-20516227)
chr2 (460-526)||(8759203-8759269)
chr2 (613-711)||(18612074-18612174)
chr2 (465-515)||(31155713-31155763)
chr2 (514-574)||(18739671-18739730)
chr2 (615-652)||(17149025-17149062)
[»] chr7 (14 HSPs)
chr7 (460-714)||(44963108-44963363)
chr7 (458-714)||(20046526-20046787)
chr7 (458-638)||(28124696-28124878)
chr7 (458-638)||(28126523-28126705)
chr7 (458-652)||(4895525-4895722)
chr7 (514-637)||(37405559-37405682)
chr7 (460-546)||(44962228-44962314)
chr7 (613-714)||(28014304-28014406)
chr7 (613-714)||(25471802-25471904)
chr7 (579-654)||(4880267-4880343)
chr7 (636-714)||(8405628-8405707)
chr7 (564-626)||(36989570-36989632)
chr7 (571-647)||(4571066-4571144)
chr7 (457-503)||(6322930-6322976)
[»] chr6 (21 HSPs)
chr6 (460-714)||(19645331-19645586)
chr6 (458-714)||(5376818-5377078)
chr6 (466-714)||(5378681-5378933)
chr6 (460-672)||(15149112-15149331)
chr6 (458-714)||(1088684-1088945)
chr6 (514-637)||(15868391-15868514)
chr6 (514-637)||(33866098-33866221)
chr6 (514-637)||(15866579-15866702)
chr6 (514-637)||(33869245-33869368)
chr6 (542-623)||(9415095-9415176)
chr6 (458-528)||(9414962-9415032)
chr6 (514-642)||(14611083-14611210)
chr6 (458-515)||(9415050-9415107)
chr6 (514-585)||(32079909-32079980)
chr6 (522-641)||(28884359-28884479)
chr6 (617-714)||(8915570-8915668)
chr6 (566-642)||(14618975-14619050)
chr6 (514-574)||(14620510-14620570)
chr6 (458-498)||(30376225-30376265)
chr6 (617-662)||(20985892-20985937)
chr6 (653-713)||(24544757-24544818)
[»] chr3 (6 HSPs)
chr3 (457-714)||(17402813-17403074)
chr3 (460-714)||(1139958-1140201)
chr3 (458-708)||(6789563-6789813)
chr3 (527-647)||(20302639-20302760)
chr3 (527-606)||(20327181-20327259)
chr3 (557-614)||(41874441-41874497)
[»] chr1 (15 HSPs)
chr1 (464-714)||(17449260-17449510)
chr1 (458-638)||(16808687-16808869)
chr1 (514-637)||(9312028-9312151)
chr1 (514-637)||(3282800-3282923)
chr1 (514-637)||(3284501-3284624)
chr1 (514-637)||(9310411-9310534)
chr1 (455-565)||(48940616-48940726)
chr1 (514-606)||(37664695-37664787)
chr1 (514-606)||(37674417-37674509)
chr1 (514-606)||(37702185-37702277)
chr1 (522-614)||(902084-902175)
chr1 (561-656)||(48941646-48941743)
chr1 (514-574)||(5924946-5925006)
chr1 (596-680)||(5924852-5924935)
chr1 (458-497)||(51020570-51020609)
[»] scaffold0057 (1 HSPs)
scaffold0057 (514-711)||(58785-58982)
[»] scaffold0048 (2 HSPs)
scaffold0048 (21-179)||(61721-61879)
scaffold0048 (21-179)||(50446-50593)
[»] scaffold0185 (1 HSPs)
scaffold0185 (21-357)||(3256-3575)
[»] scaffold0251 (1 HSPs)
scaffold0251 (514-637)||(6225-6348)
[»] chr5 (4 HSPs)
chr5 (514-637)||(39787168-39787291)
chr5 (514-688)||(25076173-25076348)
chr5 (514-688)||(25134142-25134317)
chr5 (570-614)||(6569888-6569932)
[»] scaffold0006 (1 HSPs)
scaffold0006 (514-689)||(39144-39318)
[»] scaffold0189 (1 HSPs)
scaffold0189 (632-714)||(19063-19145)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 30224173 - 30224430
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30224173 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagct 30224272  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224273 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 30224372  T
Q  658 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  30224373 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttac 30224430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 456 - 714
Target Start/End: Original strand, 5567367 - 5567626
Alignment:
Q  456 tatgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  5567367 tatgttaaaatagctggaagttatgtgaagttagttaaagtagttagactagagttagtaatcaactatagttagttgatagctaaactagagttagtag 5567466  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttct 655  Q
    ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  5567467 cttagttagaagttagttggagttagttactcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatctattcatttct 5567566  T
Q  656 acaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  5567567 acaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttac 5567626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 25248955 - 25249206
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataa---gtaaactagagttagta 554  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||| |||||||   |||||||||||||||||    
T  25248955 tgttaagatagttggaagttatgtggagttagtta---------gactagagttagtaatcaactatagttaattgataataagtaaactagagttagta 25249045  T
Q  555 gcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttc 654  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25249046 gcttggttagaagttagttaaaggtagttactcaaactaatctctatatataggaacactattgtactcattcatgatcttttatcaatctattcatttc 25249145  T
Q  655 tacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    |||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  25249146 tacaatgagttactttgagtatctccctcatgagtacccttatgcttgctatcttgcttac 25249206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 460 - 664
Target Start/End: Complemental strand, 3375709 - 3375506
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttg 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  3375709 ttaagatagttggaagttatgtggagttagttaaggtagttagacttctgttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 3375610  T
Q  560 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 659  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  3375609 gttagaagttagttagagttagttactcaaactaatctctatatataggaactctattgtacccattcattatctttt-tcaatctattcatttctacaa 3375511  T
Q  660 tgagt 664  Q
    |||||    
T  3375510 tgagt 3375506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 460 - 711
Target Start/End: Complemental strand, 31032285 - 31032038
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttg 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  31032285 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 31032186  T
Q  560 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 659  Q
    ||||||||    |||||| |||||||||||||||||||||||||||||||||| || |  |||||||||| |||||||||||||||||||| ||||| ||    
T  31032185 gttagaag----ttagagttagttactcaaactaatctctatatataggaacattactacactcattcatgatcttttatcaatctattca-ttctataa 31032091  T
Q  660 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 711  Q
    |||||| || ||| |||||||| |||||||  ||||||||||||| |||||||    
T  31032090 tgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 31032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 472 - 714
Target Start/End: Original strand, 6428699 - 6428941
Alignment:
Q  472 gaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttag 571  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||| |||||||    
T  6428699 gaagttatgtggagttagtta--gtagttagacaagagttagtaatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttag 6428796  T
Q  572 ttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcatttctacaatgagttactt 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||  ||||||||||||| |||    
T  6428797 ttagaggtagttactcaaactaatctctatatataggaacactattgtaatcattcatcatcttttaatcaaatctattca-ctctacaatgagtttctt 6428895  T
Q  670 tgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||| |||||| | |||||||  ||||||| |||||||||| |||||    
T  6428896 tgagtatctctcacatgagtactcttatgtttgctatcttacttac 6428941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 494 - 689
Target Start/End: Complemental strand, 3379366 - 3379172
Alignment:
Q  494 ggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaacta 593  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  3379366 ggtagttagactagagttagtaatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaacta 3379267  T
Q  594 atctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt 689  Q
    ||||||||||  ||||| |||||||||||||||||| || ||||||||||||||||| ||||| |||||||| || ||| |||||||| |||||||    
T  3379266 atctctatattaaggaaaactattgtactcattcatcattttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagt 3379172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 543 - 654
Target Start/End: Complemental strand, 36536035 - 36535924
Alignment:
Q  543 ctagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaa 642  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatatagcaatactgttgtactcattcatcatcttttatcaa 36535936  T
Q  643 tctattcatttc 654  Q
    ||||||||||||    
T  36535935 tctattcatttc 36535924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 514 - 576
Target Start/End: Original strand, 14935576 - 14935638
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttaga 576  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  14935576 taatcaactatagttagttgataggtaaactagagttagtaacttggttagaagttagttaga 14935638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 5567729 - 5567676
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtt 511  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  5567729 tgttaaaatagctggaagttatgtgaagttagttaaggtagttagactagagtt 5567676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 607
Target Start/End: Complemental strand, 29274849 - 29274786
Alignment:
Q  544 tagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatatag 607  Q
    ||||||||||||||||||||   ||||||||||| || |||||| || |||||| |||||||||    
T  29274849 tagagttagtagcttggttacgggttagttagagttaattactccaattaatctttatatatag 29274786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 7040304 - 7040561
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7040304 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagct 7040403  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7040404 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 7040503  T
Q  658 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  7040504 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttac 7040561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 458 - 714
Target Start/End: Complemental strand, 23564963 - 23564706
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23564963 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagct 23564864  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23564863 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 23564764  T
Q  658 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||    
T  23564763 aatgagttactttgagtatctccctcatgagtactcttatgcttgctattttgcttac 23564706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 18656051 - 18656308
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    |||||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  18656051 tgttaaaatagccggaagttatgtgaagttagttaaggtagttagactagagttagtaatcaactatagttagttgatagctaaactagagttagtagct 18656150  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 657  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  18656151 tagttagaagttagttagagttagttactcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatctattcatttctac 18656250  T
Q  658 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  18656251 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttac 18656308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 458 - 646
Target Start/End: Complemental strand, 23566628 - 23566449
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    |||||||||||||| ||||||||||||||||||||         ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  23566628 tgttaagatagttgaaagttatgtggagttagtta---------gactagagttagtaatcaactatagttagttgataagtaaactagacttagtagct 23566538  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatcta 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23566537 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatcta 23566449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 458 - 638
Target Start/End: Original strand, 52520542 - 52520724
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  52520542 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 52520641  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttta 638  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52520642 tttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatctttta 52520724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 458 - 638
Target Start/End: Original strand, 52518700 - 52518882
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  52518700 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 52518799  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttta 638  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  52518800 tttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactgttgtactcaatcatcatctttta 52518882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 514 - 642
Target Start/End: Complemental strand, 3529379 - 3529251
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3529379 taatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 3529280  T
Q  614 tattgtactcattcattatcttttatcaa 642  Q
    |||||||||||||||||||||||||||||    
T  3529279 tattgtactcattcattatcttttatcaa 3529251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 514 - 642
Target Start/End: Original strand, 23985773 - 23985901
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  23985773 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatataggaacac 23985872  T
Q  614 tattgtactcattcattatcttttatcaa 642  Q
    |||||||||||||||  ||||||||||||    
T  23985873 tattgtactcattcaccatcttttatcaa 23985901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 541 - 703
Target Start/End: Original strand, 54296454 - 54296617
Alignment:
Q  541 aactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-at 639  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatgatcttttaat 54296553  T
Q  640 caatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgct 703  Q
    ||||| |||||||| || |||||||| || ||| |||||||||||| |||  |||||||||||||    
T  54296554 caatcaattcattt-tataatgagtttctatgagtatctccctcatcagtactcttatgcttgct 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 514 - 711
Target Start/End: Complemental strand, 52545333 - 52545137
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||    
T  52545333 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttacac-aactaaactctatatataggaacac 52545235  T
Q  614 tattgtactca-ttcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 711  Q
    |  |||| ||| || ||||||||||||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  ||||||||| ||| |||||||    
T  52545234 tcatgta-tcattttattatcttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgct 52545137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 458 - 647
Target Start/End: Complemental strand, 3274728 - 3274538
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    |||||| ||||||||||||||| || |||||||||||||||| | |||| ||||||||||||| |||| |||||||||| |||||| ||||||||| |||    
T  3274728 tgttaaaatagttggaagttatatgaagttagttaaggtagtaaaactatagttagtaatcaactataattagttgataggtaaacaagagttagtggct 3274629  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatat-aggaacactattgtactcattcattatcttttatcaatctat 647  Q
    || ||||||||||||||||| || ||||||||| |||| ||||||||| |  | ||  || ||| |||||||| |||||||||||||||||    
T  3274628 tgattagaagttagttagagttaattactcaaattaatttctatatataaacatcatcatggtaatcattcatcatcttttatcaatctat 3274538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 614
Target Start/End: Original strand, 24807423 - 24807522
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||  ||||||  |||| ||||||| | ||||||  |||||||||||||||||    
T  24807423 taatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttacac-aactaaaatctatatataggaacac 24807521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 626 - 711
Target Start/End: Complemental strand, 56074766 - 56074680
Alignment:
Q  626 tcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 711  Q
    |||| ||||||||||| |||||||||||||| || ||||| || ||| |||||||| |||||||  ||||||||||||| |||||||    
T  56074766 tcatcatcttttatcattctattcatttctataacgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 56074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 18395866 - 18395816
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttag 564  Q
    ||||||| ||||||||||||||| |||||||| ||||| ||| ||||||||    
T  18395866 taatcaactatagttagttgataggtaaactatagttaataggttggttag 18395816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 29758063 - 29758320
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29758063 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagacttagtaatcaactatagttagttgataagtaaactagagttagtagct 29758162  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29758163 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 29758262  T
Q  658 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  29758263 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttac 29758320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 603 - 689
Target Start/End: Complemental strand, 8759207 - 8759121
Alignment:
Q  603 tataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt 689  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  8759207 tataggaacactattgtactcattcatcatcttttatcaatctgttcatttctacaatgagtttctttgagtatctccctcatgagt 8759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 469 - 637
Target Start/End: Complemental strand, 20516227 - 20516053
Alignment:
Q  469 ttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttggttagaagt 568  Q
    |||||||||||||| |||||||||||||| ||| ||| ||||||||||| || ||||||||||   ||||| | |||| |||||||||||||||| |||     
T  20516227 ttggaagttatgtgcagttagttaaggtaattaaactggagttagtaattaactatagttagt---taagttagctagggttagtagcttggttaaaaga 20516131  T
Q  569 tagttagag-----gtagttact----caaactaatctctatatataggaacactattgtactcattcattatctttt 637  Q
    |||||||||      ||||||||    ||||||||| | |||||||| ||||||||||||||||||||||||| ||||    
T  20516130 tagttagagttagtttagttactcaaacaaactaatttttatatataagaacactattgtactcattcattatttttt 20516053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 460 - 526
Target Start/End: Complemental strand, 8759269 - 8759203
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatag 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  8759269 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatag 8759203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 613 - 711
Target Start/End: Complemental strand, 18612174 - 18612074
Alignment:
Q  613 ctattgtactcattcattat-cttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgc 710  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||  | | |||||||||| |||||||  ||||||||||||| ||||||    
T  18612174 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctcccacatgagtactcttatgcttgctttcttgc 18612075  T
Q  711 t 711  Q
    |    
T  18612074 t 18612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 31155763 - 31155713
Alignment:
Q  465 atagttggaagttatgtggagttagttaaggtagttagactagagttagta 515  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  31155763 atagttggaagttatgcggagttagttaaggtagttaaactagagttagta 31155713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 574
Target Start/End: Original strand, 18739671 - 18739730
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagtta 574  Q
    ||||||||||||||||||||||| || |||||||||||||||  ||||||| |||||||||    
T  18739671 taatcaattatagttagttgatacgttaactagagttagtagtctggttag-agttagtta 18739730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 652
Target Start/End: Complemental strand, 17149062 - 17149025
Alignment:
Q  615 attgtactcattcattatcttttatcaatctattcatt 652  Q
    |||||||||  |||||||||||||||||||||||||||    
T  17149062 attgtactctatcattatcttttatcaatctattcatt 17149025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 460 - 714
Target Start/End: Original strand, 44963108 - 44963363
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttg 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  44963108 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 44963207  T
Q  560 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 659  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44963208 gttagaagttagttagagttagttactcaaattaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaa 44963307  T
Q  660 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||| || |||||| |||||||||||||| |  |||||||||||||||||| |||||    
T  44963308 tgaatttctttgagtatctccctcatgaatactcttatgcttgctatcttacttac 44963363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 458 - 714
Target Start/End: Complemental strand, 20046787 - 20046526
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  20046787 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 20046688  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatc-ttttatcaatctattcattt 653  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  20046687 tttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatctttttatcaatctattcattt 20046588  T
Q  654 ctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    |||||||||||| || ||| |||||||| |||||||  ||||||||||||||||| ||||||    
T  20046587 ctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctcgcttac 20046526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 458 - 638
Target Start/End: Complemental strand, 28124878 - 28124696
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  28124878 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 28124779  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttta 638  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28124778 tttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatctttta 28124696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 458 - 638
Target Start/End: Complemental strand, 28126705 - 28126523
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  28126705 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 28126606  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttta 638  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28126605 tttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatctttta 28126523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 458 - 652
Target Start/End: Original strand, 4895525 - 4895722
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  4895525 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagattagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 4895624  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atcaatctattcatt 652  Q
     ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  4895625 tttggttagaagttagttagagttatttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaatatattcatt 4895722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 514 - 637
Target Start/End: Complemental strand, 37405682 - 37405559
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37405682 taatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 37405583  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||| ||||||||    
T  37405582 tattgtactcattcactatctttt 37405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 44962228 - 44962314
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactag 546  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  44962228 ttaacatagttggaagttatgtgaagttagttaaggtagttagacttgagtgagtaatcaactatagttagttgataagtaaactag 44962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 613 - 714
Target Start/End: Complemental strand, 28014406 - 28014304
Alignment:
Q  613 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgag-tttcttatgcttgctatcttgct 711  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||   |||||||||||||||||||||    
T  28014406 ctattgtactcattattcatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgct 28014307  T
Q  712 tac 714  Q
    |||    
T  28014306 tac 28014304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 714
Target Start/End: Complemental strand, 25471904 - 25471802
Alignment:
Q  613 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 711  Q
    ||||||||||||||  | ||||||||||||||||||||||| || |||||||| || | | |||||||| | ||| |  |||||||||||||||||| ||    
T  25471904 ctattgtactcattattcatcttttatcaatctattcatttatataatgagtttctattagtatctcccacgtgaataatcttatgcttgctatctttct 25471805  T
Q  712 tac 714  Q
    |||    
T  25471804 tac 25471802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 654
Target Start/End: Original strand, 4880267 - 4880343
Alignment:
Q  579 tagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatct-attcatttc 654  Q
    ||||||||  || ||||||| ||||||| |||||| ||| ||||||||||| ||||||||||||||| |||||||||    
T  4880267 tagttacttcaattaatctcgatatatatgaacaccattatactcattcatcatcttttatcaatctaattcatttc 4880343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 714
Target Start/End: Original strand, 8405628 - 8405707
Alignment:
Q  636 ttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||| |||||||||||||||||| ||  || |||||||| ||||| |  ||||||||||||||| ||||||||    
T  8405628 ttatcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttac 8405707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 626
Target Start/End: Complemental strand, 36989632 - 36989570
Alignment:
Q  564 gaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcatt 626  Q
    |||||||  ||||| |||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  36989632 gaagttatgtagagttagttattcaaactaatctctatatatagaaacattattgtagtcatt 36989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 647
Target Start/End: Original strand, 4571066 - 4571144
Alignment:
Q  571 gttagaggtagttactcaaactaatctctatatataggaacact-attgtactca--ttcattatcttttatcaatctat 647  Q
    ||||||| || |||||  |||||||||||||||||| ||||||| |||||| |||  |||||||||||||||||||||||    
T  4571066 gttagagttaattacttcaactaatctctatatatatgaacactcattgta-tcattttcattatcttttatcaatctat 4571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 503
Target Start/End: Original strand, 6322930 - 6322976
Alignment:
Q  457 atgttaagatagttggaagttatgtggagttagttaaggtagttaga 503  Q
    ||||||| ||||||||||||||| |||||||| ||| ||||||||||    
T  6322930 atgttaaaatagttggaagttatatggagttaattacggtagttaga 6322976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 460 - 714
Target Start/End: Complemental strand, 19645586 - 19645331
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttg 559  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19645586 ttaagatagttagaagatatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactaaagttagtagcttg 19645487  T
Q  560 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 659  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19645486 gttagaaattagtcagaggtagttactcaaactaatctctatatataagaacactattgtactcattcattatcttttatcaatctatttatttctacaa 19645387  T
Q  660 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||| || |||||| ||||||||||||||||  |||||| |||||||||||| ||||    
T  19645386 tgaatttctttgagtatctccctcatgagtactcttatacttgctatcttggttac 19645331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 5376818 - 5377078
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  5376818 tgttaaaatagttggaagttatatgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 5376917  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatcttttatcaatctattcatttc 654  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5376918 tttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttc 5377017  T
Q  655 tacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||| || ||| |||||||| |||||||  ||||||||||||||||||||||||    
T  5377018 tacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttac 5377078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 466 - 714
Target Start/End: Original strand, 5378681 - 5378933
Alignment:
Q  466 tagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtagcttggtta 563  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5378681 tagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtttggtta 5378780  T
Q  564 gaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatga 662  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5378781 gaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttctacaatga 5378880  T
Q  663 gttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||| || ||| |||||||| |||||||  ||||||||||||||||||||||||    
T  5378881 gtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttac 5378933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 460 - 672
Target Start/End: Complemental strand, 15149331 - 15149112
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttg 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  15149331 ttaagatagttggaagttatgcggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggtcagtagcttg 15149232  T
Q  560 gttagaagttagttagaggtagttactcaaactaatctctatatataggaac--ac-----tattgtactcattcattatcttttatcaatctattcatt 652  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||||||  ||     || ||||||||||||||||||||||||||||||||||||    
T  15149231 gttagaagttagttagagttagttactcaaattaatttctatatataggaacgtactgttgtactgtactcattcattatcttttatcaatctattcatt 15149132  T
Q  653 tctacaatgagttactttga 672  Q
    ||||||||||||| ||||||    
T  15149131 tctacaatgagtttctttga 15149112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 458 - 714
Target Start/End: Complemental strand, 1088945 - 1088684
Alignment:
Q  458 tgttaagatagttggaagttatgtg----gagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagt 553  Q
    |||||| ||| ||||||||||||||     |||||||||| ||||||| | |||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  1088945 tgttaaaatacttggaagttatgtgaagttagttagttaaagtagttaaattagagttagtgatcaactatagttagttgataagtaaattagagttagt 1088846  T
Q  554 agcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcattt 653  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  1088845 agctttgttagaagttagttagagttagttagtcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattca-tt 1088747  T
Q  654 ctacaatgagttac-tttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||| |||||||| | ||||| ||||||||  ||||||  ||||||| ||||||||||||||||    
T  1088746 ctataatgagtttcttttgagtatctcccatatgagtactcttatgtttgctatcttgcttac 1088684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 15868391 - 15868514
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15868391 taatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 15868490  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||||||||||||    
T  15868491 tattgtactcattcattatctttt 15868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 33866098 - 33866221
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33866098 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaatctctatatataggaacac 33866197  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||| ||||||||    
T  33866198 tattgtactcattcactatctttt 33866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 15866579 - 15866702
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  15866579 taatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatctctatatttaggaacac 15866678  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||||||||||||    
T  15866679 tattgtactcattcattatctttt 15866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 33869245 - 33869368
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  33869245 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatctctatatataggaacac 33869344  T
Q  614 tattgtactcattcattatctttt 637  Q
    |||||||| |||||| ||||||||    
T  33869345 tattgtacgcattcactatctttt 33869368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 542 - 623
Target Start/End: Original strand, 9415095 - 9415176
Alignment:
Q  542 actagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactc 623  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaatctctatatataagaacactattgtactc 9415176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 528
Target Start/End: Original strand, 9414962 - 9415032
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagtt 528  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  9414962 tgttaaaatagttggaagttatgcggagttagttaaggtagttagactagagttagtgatcaactatagtt 9415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 514 - 642
Target Start/End: Original strand, 14611083 - 14611210
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||| ||||||||||| ||||| ||||||||||||||| ||||  ||||| |||||| ||||||| | |||||| ||||||||||||||||||    
T  14611083 taatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttacac-aactaaactctatatataggaacac 14611181  T
Q  614 tattgtactca-ttcattatcttttatcaa 642  Q
    |  |||| ||| ||||||||||||||||||    
T  14611182 tcgtgta-tcatttcattatcttttatcaa 14611210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 9415050 - 9415107
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagta 515  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9415050 tgttaaaatagttggaagttatgtggagttagttaaggaagttagactagagttagta 9415107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 514 - 585
Target Start/End: Original strand, 32079909 - 32079980
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttac 585  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||||||||  |||||||||||| |||||||    
T  32079909 taatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttac 32079980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 522 - 641
Target Start/End: Complemental strand, 28884479 - 28884359
Alignment:
Q  522 tatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact-attgta 620  Q
    ||||||||||||||| || |||||||||||| ||||| |||   |||| |||||||   ||||||  || |||||| |||||| ||||||| | ||||||    
T  28884479 tatagttagttgataggttaactagagttagaagctttgtttatagttggttagagtcggttacttcaattaatctgtatataaaggaacaatcattgta 28884380  T
Q  621 ctcattcattatcttttatca 641  Q
    |||||||||||||||||||||    
T  28884379 ctcattcattatcttttatca 28884359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 714
Target Start/End: Original strand, 8915570 - 8915668
Alignment:
Q  617 tgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    |||||||||| |  ||||||||| |||||||||||||||| ||| |||| || ||| ||||| || || ||||  ||||||||||||| ||||||||||    
T  8915570 tgtactcatttagcatcttttattaatctattcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgcttac 8915668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 642
Target Start/End: Original strand, 14618975 - 14619050
Alignment:
Q  566 agttagttagaggtagttactcaaactaatctctatatataggaacactattgtactca-ttcattatcttttatcaa 642  Q
    |||||||||||| ||||||| ||| |||| |||||||||||||||||||  |||| ||| ||||||||||||||||||    
T  14618975 agttagttagagttagttacacaa-ctaaactctatatataggaacactcatgta-tcatttcattatcttttatcaa 14619050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 574
Target Start/End: Original strand, 14620510 - 14620570
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagtta 574  Q
    ||||||| |||  |||||||||| |||||||| |||||||||||||||||  |||||||||    
T  14620510 taatcaactatgattagttgataggtaaactacagttagtagcttggttaagagttagtta 14620570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 30376225 - 30376265
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtag 498  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  30376225 tgttaaaatagttggaagttatgtggagttagttaacgtag 30376265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 20985937 - 20985892
Alignment:
Q  617 tgtactcattcattatcttttatcaatctattcatttctacaatga 662  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||    
T  20985937 tgtactcatttgctatcttttatcaatctattcatttctataatga 20985892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 713
Target Start/End: Original strand, 24544757 - 24544818
Alignment:
Q  653 tctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgctta 713  Q
    ||||| ||||||| || ||| ||||||||||||||||  ||||||||||||| |||||||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgctta 24544818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 457 - 714
Target Start/End: Complemental strand, 17403074 - 17402813
Alignment:
Q  457 atgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagta 554  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||    
T  17403074 atgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagta 17402975  T
Q  555 gcttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatcttttatcaatctattcattt 653  Q
    | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17402974 gtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcattt 17402875  T
Q  654 ctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    |||||||||||| || ||| |||||||| |||||||  ||||||||||||||||||||||||    
T  17402874 ctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttac 17402813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 460 - 714
Target Start/End: Original strand, 1139958 - 1140201
Alignment:
Q  460 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttg 559  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||            |    
T  1139958 ttaagatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactag------------g 1140045  T
Q  560 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 659  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1140046 gttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaa 1140145  T
Q  660 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  1140146 tgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttac 1140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 458 - 708
Target Start/End: Original strand, 6789563 - 6789813
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagct 557  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||  |||||||||| ||||||| |||||||||||||||||    
T  6789563 tgttaaaatagttggaagtaatgtgtagttagttaaggtagttagactagagttggtaatcatgtatagttagtggataagtgaactagagttagtagct 6789662  T
Q  558 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 657  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||    
T  6789663 tggttagaagttagttagagttagttactcaaactaatctctatatataggaatactattgtactcattcactatcttttttcaatctattca-ttctac 6789761  T
Q  658 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatctt 708  Q
    |||||||| || ||| |||||||| |||||||  ||||||||||||||||||    
T  6789762 aatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctt 6789813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 647
Target Start/End: Original strand, 20302639 - 20302760
Alignment:
Q  527 ttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact-attgtactcat 625  Q
    |||||||| | || ||||||| ||||||| ||||||| |||| ||||| || | |||| ||||||||||||||||||||| ||||||| || |||| |||    
T  20302639 ttagttgaaaggttaactagacttagtagattggtta-aagtaagttatagttggttattcaaactaatctctatatataagaacactcatcgtac-cat 20302736  T
Q  626 t--cattatcttttatcaatctat 647  Q
    |  ||||||||||||| |||||||    
T  20302737 ttccattatcttttataaatctat 20302760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 20327181 - 20327259
Alignment:
Q  527 ttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 606  Q
    |||||||| | || ||||||| ||||||||||||||| |||| ||||| || | ||||||||||||||||||| ||||||    
T  20327181 ttagttgaaaggttaactagacttagtagcttggtta-aagtaagttatagttggttactcaaactaatctctctatata 20327259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 614
Target Start/End: Original strand, 41874441 - 41874497
Alignment:
Q  557 ttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 614  Q
    |||||||  |||||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  41874441 ttggttaagagttagttagagttagttacacaa-ctaaactctatatataggaacact 41874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 2e-94; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 464 - 714
Target Start/End: Original strand, 17449260 - 17449510
Alignment:
Q  464 gatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagtagcttggtta 563  Q
    |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  17449260 gatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttcgtta 17449359  T
Q  564 gaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgag 663  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  17449360 gaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-tcaatctattcatgtctacaatgag 17449458  T
Q  664 ttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
     | || ||| |||||||| |||||||  |||| |||||||||||||||||||    
T  17449459 attctatgagtatctcccacatgagtactcttttgcttgctatcttgcttac 17449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 458 - 638
Target Start/End: Complemental strand, 16808869 - 16808687
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagtta--gtaatcaattatagttagttgataagtaaactagagttagtag 555  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||    
T  16808869 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 16808770  T
Q  556 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttta 638  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16808769 tttggttagaagttagttagagttagttactcaaactaatctctatatatatgaacactattgtactcattcatcatctttta 16808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 9312028 - 9312151
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9312028 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 9312127  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||||||||||||    
T  9312128 tattgtactcattcattatctttt 9312151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 3282800 - 3282923
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3282800 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 3282899  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||| ||||||||    
T  3282900 tattgtactcattcactatctttt 3282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 3284501 - 3284624
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3284501 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 3284600  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||| ||||||||    
T  3284601 tattgtactcattcactatctttt 3284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 9310411 - 9310534
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  9310411 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaatatctatatataggaacac 9310510  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||||||||||||    
T  9310511 tattgtactcattcattatctttt 9310534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 455 - 565
Target Start/End: Original strand, 48940616 - 48940726
Alignment:
Q  455 atatgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactagagttagta 554  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48940616 atatgttaaaatagttggaagttatgtggagttagttaaggtagttagacaagagttagtaatcaactatagttagttgataagtaaactagagttagta 48940715  T
Q  555 gcttggttaga 565  Q
    | |||||||||    
T  48940716 gtttggttaga 48940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 514 - 606
Target Start/End: Complemental strand, 37664787 - 37664695
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 606  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  37664787 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatata 37664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 514 - 606
Target Start/End: Complemental strand, 37674509 - 37674417
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 606  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  37674509 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatata 37674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 514 - 606
Target Start/End: Original strand, 37702185 - 37702277
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 606  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  37702185 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaatctctatatata 37702277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 522 - 614
Target Start/End: Original strand, 902084 - 902175
Alignment:
Q  522 tatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 614  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | || ||| |||| ||||||||||||||    
T  902084 tatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacac-aattaaactctctatataggaacact 902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 561 - 656
Target Start/End: Original strand, 48941646 - 48941743
Alignment:
Q  561 ttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcatttcta 656  Q
    ||||||||||||||||| | |||||||||||||||||||||| |||  |||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  48941646 ttagaagttagttagagttggttactcaaactaatctctatacatataaacactattgtactcattcagtatcttttaatcaaatctattcatttcta 48941743  T

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Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 574
Target Start/End: Complemental strand, 5925006 - 5924946
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagtta 574  Q
    ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  5925006 taatcaactatagttagttgataggtaaattagagttagtagtttggttagaagttagtta 5924946  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 680
Target Start/End: Complemental strand, 5924935 - 5924852
Alignment:
Q  596 ctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctcc 680  Q
    ||||||||||| |||||||  |||| |  ||||| |||||||||||||||||||| ||||| |||||||| || ||| |||||||    
T  5924935 ctctatatataagaacactcgtgtattatttcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcc 5924852  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 497
Target Start/End: Original strand, 51020570 - 51020609
Alignment:
Q  458 tgttaagatagttggaagttatgtggagttagttaaggta 497  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  51020570 tgttaaaatagttggaagttatgtggagttggttaaggta 51020609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 514 - 711
Target Start/End: Original strand, 58785 - 58982
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  58785 taatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 58884  T
Q  614 tattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 711  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  ||||||||||||| |||||||    
T  58885 tattgtactcattcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 58982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 123; Significance: 8e-63; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 61721 - 61879
Alignment:
Q  21 aacgctgttagtctttttgttcacagacttgggaaacatgacaagtgtcttcatttcctcttaagcttattgaaagcaacctgctgtttctaaaaaatta 120  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  61721 aacgctgttagtctttttgttcacagacttgggaaataggacaagtgtcttcatttcctcttaagcttattgaaagcaacctgctctttctaaaaaatta 61820  T
Q  121 tctgtactctttaaacggaaagcataagagaaaagcaaaaacagttaataaagacatga 179  Q
    |||||||| |||||| | ||| ||||||||||||||||||||| |||||||| ||||||    
T  61821 tctgtactttttaaaagcaaaacataagagaaaagcaaaaacaattaataaaaacatga 61879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 50446 - 50593
Alignment:
Q  21 aacgctgttagtctttttgttcacagacttgggaaacatgacaagtgtcttcatttcctcttaagcttattgaaagcaacctgctgtttctaaaaaatta 120  Q
    ||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  50446 aacgctgttagtctttttgttcacagac--------caggacaagtgtcttcatttcctcttaagcttattgaaagcaacctt---tttctaaaaaatta 50534  T
Q  121 tctgtactctttaaacggaaagcataagagaaaagcaaaaacagttaataaagacatga 179  Q
    |||||||| |||||| | ||| ||||||||||||||||||||| |||||||| ||||||    
T  50535 tctgtactttttaaaagcaaaacataagagaaaagcaaaaacaattaataaaaacatga 50593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 3256 - 3575
Alignment:
Q  21 aacgctgttagtctttttgttcacagacttgggaaacatgacaagtgtcttcatttcctcttaagcttattgaaagcaacctgctgtttctaaaaaatta 120  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||   || ||||||||||||||    
T  3256 aacgcagttagtctttttgttcacagaattgggaaacaagacaagtgtcttcatttccgcttaagcttattgaaagcaac---ctttttctaaaaaatta 3352  T
Q  121 tctgtactctttaaacggaaagcataagagaaaagcaaaaacagttaataaagacatgaaaacaatgatattcataatacaaatatgttaaattattcct 220  Q
    |  | ||| | |||| | ||| ||||||||| ||||||||||   |||||||||||||||||| |||||||| |||| ||||||||||||||||| ||      
T  3353 ttgggactttctaaaagcaaaacataagagagaagcaaaaaccactaataaagacatgaaaaccatgatatttataagacaaatatgttaaattaatc-- 3450  T
Q  221 tttagatctttatgaaagccacctatattataagaatctatc-ccaaaaagaggatgccgccggtaacttaactagaaagaatactgagaagaatctcca 319  Q
    ||||     ||||  |||  | | | ||||     ||||||| ||||||||||||||||||| ||| |||||| |||||||||||||| || |||||||     
T  3451 ttta-----ttat--aaggta-caacatta-----atctatccccaaaaagaggatgccgccagtatcttaaccagaaagaatactgaaaataatctcct 3537  T
Q  320 taattattgtacctgcttaagaggactaaccaaagtaa 357  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  3538 taattattgtatctggttaagaggactaaccaaagtaa 3575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 514 - 637
Target Start/End: Original strand, 6225 - 6348
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6225 taatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 6324  T
Q  614 tattgtactcattcattatctttt 637  Q
    ||||||||||||||| ||||||||    
T  6325 tattgtactcattcactatctttt 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 514 - 637
Target Start/End: Complemental strand, 39787291 - 39787168
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39787291 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 39787192  T
Q  614 tattgtactcattcattatctttt 637  Q
    |||| |||||||||| | ||||||    
T  39787191 tattttactcattcactgtctttt 39787168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 514 - 688
Target Start/End: Complemental strand, 25076348 - 25076173
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaaca- 612  Q
    ||||||| ||||||||||||||| || ||||||| |||| |||   |||   ||||||||||||  ||| | || |||||||||||| |||||||||||     
T  25076348 taatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatataggaacaa 25076249  T
Q  613 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgag 688  Q
    | ||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||    
T  25076248 caattgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcatgag 25076173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 514 - 688
Target Start/End: Complemental strand, 25134317 - 25134142
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaaca- 612  Q
    ||||||| ||||||||||||||| || ||||||| |||| |||   |||   ||||||||||||  ||| | || |||||||||||| |||||||||||     
T  25134317 taatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatataggaacaa 25134218  T
Q  613 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgag 688  Q
    | ||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||    
T  25134217 caattgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcatgag 25134142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 614
Target Start/End: Original strand, 6569888 - 6569932
Alignment:
Q  570 agttagaggtagttactcaaactaatctctatatataggaacact 614  Q
    |||||||| |||||| || ||||||||||||||||||||||||||    
T  6569888 agttagagttagttagtccaactaatctctatatataggaacact 6569932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 514 - 689
Target Start/End: Original strand, 39144 - 39318
Alignment:
Q  514 taatcaattatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 613  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||| ||||||||||||||||||    
T  39144 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttacac-aactaaactctatatataggaacac 39242  T
Q  614 tattgtactca-ttcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt 689  Q
    |  |||| ||| ||||| |||||||||||||||||||||||||| ||||||||  | ||| |||||||| |||||||    
T  39243 tcatgta-tcatttcatcatcttttatcaatctattcatttctataatgagtttttatgagtatctcccacatgagt 39318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 714
Target Start/End: Original strand, 19063 - 19145
Alignment:
Q  632 tcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttac 714  Q
    ||||||||||||||||||| ||||| |||||||| || |||  ||||||| |||||||  || ||||||| |||||||||||||    
T  19063 tcttttatcaatctattca-ttctataatgagtttctatgagcatctcccacatgagtactcctatgctttctatcttgcttac 19145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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