View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_low_5 (Length: 457)
Name: NF1563_low_5
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 54 - 370
Target Start/End: Complemental strand, 46775946 - 46775630
Alignment:
| Q |
54 |
gagggggatttacatacctaatattttaaggttttgtgtaaatatttggtgtcaaccatgttgttgttcatagctcaacgtgcctctatattttagactc |
153 |
Q |
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| T |
46775946 |
gagggggatttacatacctaatattttaaggttttgtgtaaatatttggtgtcaaccatgttgttgttcatagctcaacgtgcctctatattttagactc |
46775847 |
T |
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| Q |
154 |
cctcacaactcaacatgcacatatagaccatgtaccattcttttcctctgagaattacagaagaagattttcagttctgcttcgagtccttatccatgta |
253 |
Q |
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| T |
46775846 |
cctcacaactcaacatgcacatatagaccatgtaccattcttttcctctgagaattacataagaagattttcagttctgcttcgagtccttatccatgta |
46775747 |
T |
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| Q |
254 |
tccttttcaaagnnnnnnntctgagagctggaggatatttgtcattgatgtttaatatctttgaattgtgaggtattgtgcaaaaattgcaaatagacct |
353 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
46775746 |
tccttttcaaagaaaaaaatctgagagctggaggatatttttcattgatgtttaatatctttggattgtgaggtattgtgcaaaagttgcaaatagacct |
46775647 |
T |
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| Q |
354 |
agccaataccaccttgg |
370 |
Q |
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| T |
46775646 |
acccaatgccaccttgg |
46775630 |
T |
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