View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1563_low_9 (Length: 350)
Name: NF1563_low_9
Description: NF1563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1563_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 152 - 323
Target Start/End: Complemental strand, 38093137 - 38092965
Alignment:
| Q |
152 |
tttgcctccaccaatatattcaaggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaa |
251 |
Q |
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| T |
38093137 |
tttgcctccaccaatatattcaaggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaa |
38093038 |
T |
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| Q |
252 |
ttgtccgaaggaatcccattgtttcct-ttttccaatatttctcattcaagaaaacaacatatagggtttctt |
323 |
Q |
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| T |
38093037 |
ttgtccgaaggaatcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggtttctt |
38092965 |
T |
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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 38093307 - 38093167
Alignment:
| Q |
17 |
aaaaaagtctcatcacatcggttgcaaattcctatttaaacagtcactaattacaaacttaacgagctcactg-tatttccaatctaaggaatatttcat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
38093307 |
aaaaaagtctcatcacatcggttgcaaattcctatttaaacagtcactaattacaaacttaacgagctcactgttttttccaatctaaggaatatttcat |
38093208 |
T |
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| Q |
116 |
gttaggaaatttctctcttttgcttctctaattctctttgc |
156 |
Q |
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| T |
38093207 |
gttaggaaatttgtctcttttgcttctctaattctctttgc |
38093167 |
T |
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