View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15641_high_2 (Length: 323)
Name: NF15641_high_2
Description: NF15641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15641_high_2 |
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| [»] scaffold0356 (1 HSPs) |
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| [»] scaffold0075 (1 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: scaffold0356 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 11574 - 11261
Alignment:
| Q |
1 |
gcgtataaaatatgagcggggaaagagactccgcggcaataggacattggaatgagttgtccgtcaatcgcagccatggaaagagcccgactaagaacct |
100 |
Q |
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|||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
11574 |
gcgtataaaatatgagtggggaaagatactccacgacaataggacattggaatgagttgtccgtcagtcgcagccatggaaagcgcccgactaagaacct |
11475 |
T |
|
| Q |
101 |
cttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccacgcgaacatgaaaagaacccaacagccttcccattaaccaatattga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| || |||||||||||||| | ||| |
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| T |
11474 |
cttcaactagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccatgcgaacaagtaaagaacccaacggctttcccattaaccaagactga |
11375 |
T |
|
| Q |
201 |
taaacgagcggaatgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaaccaaaccgctgaagcaccgcaagaagaaaattccaatctaacgta |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11374 |
taaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaaccaaaccgctgaagcaccgcaagaagaaaattccaatctaacgta |
11275 |
T |
|
| Q |
301 |
tcgaatgcctttgc |
314 |
Q |
| |
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|||||||||||||| |
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| T |
11274 |
tcgaatgcctttgc |
11261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 19739888 - 19739578
Alignment:
| Q |
1 |
gcgtataaaatatgagcggggaaagagactccgcggcaataggacattggaatgagttgtccgtcaatcgcagccatggaaagagcccgactaagaacct |
100 |
Q |
| |
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||||||||||| |||| ||| | |||||| || || ||||| |||||||| ||||| ||||| | | | ||| ||||| || |||||||||||||||| |
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| T |
19739888 |
gcgtataaaatctgagtgggaagagagaccccacgacaataagacattggtgtgagtcgtccgaaagttgaagcaatggagagtgcccgactaagaacct |
19739789 |
T |
|
| Q |
101 |
cttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccacgcgaacatgaaaagaacccaacagccttcccattaaccaatattga |
200 |
Q |
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||||||| ||||| || ||||| || |||||||||| |||||| ||||| |||| ||| || ||||| ||||||||||| |||||||||||||| | ||| |
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| T |
19739788 |
cttcagccagacagaagagaagaggggacaatgggtgtccttgtcgaaccccacccgagcaagaaaaaaacccaacagctttcccattaaccaacactga |
19739689 |
T |
|
| Q |
201 |
taaacgagcggaatgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaaccaaaccgctgaagcaccgcaagaagaaaattccaatctaacgta |
300 |
Q |
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|||||| || || | |||||||||||| ||||||||||||| |||||||| ||||||||||||| |||| ||| || ||| |||||||||||||| ||| |
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| T |
19739688 |
taaacgggctgatttcaaaatcaccaagatccaatgcacaattttttcatgaaaaccaaaccgccgaagaaccaaaataaggaaattccaatctaaggta |
19739589 |
T |
|
| Q |
301 |
tcgaatgcctt |
311 |
Q |
| |
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||||| ||||| |
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|
| T |
19739588 |
tcgaaagcctt |
19739578 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 48730 - 48800
Alignment:
| Q |
84 |
agcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccac |
154 |
Q |
| |
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|||||| || || ||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||||| |
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| T |
48730 |
agcccggcttagcacctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccac |
48800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 15144206 - 15144264
Alignment:
| Q |
97 |
acctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccacg |
155 |
Q |
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||||||||||||||||| |||||||| || ||||| ||||| ||||| ||||||||||| |
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| T |
15144206 |
acctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccacg |
15144264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 15157289 - 15157214
Alignment:
| Q |
79 |
gaaagagcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccac |
154 |
Q |
| |
|
|||| |||||| || || ||||||||||| ||||| |||||||| || |||| ||||||||||| |||||||||| |
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| T |
15157289 |
gaaatagcccggcttagcacctcttcagcgagacagaaaagaagaggggacagggggtctccttgtcgaacaccac |
15157214 |
T |
|
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 9007 - 9077
Alignment:
| Q |
84 |
agcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccac |
154 |
Q |
| |
|
|||||| || || ||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||||| |
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| T |
9007 |
agcccggcttagcacctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccac |
9077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 12161278 - 12161203
Alignment:
| Q |
79 |
gaaagagcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccac |
154 |
Q |
| |
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|||| |||||| || || ||||||||||| ||||| |||||||| || |||| ||||||||||| |||||||||| |
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| T |
12161278 |
gaaatagcccggcttagcacctcttcagcgagacagaaaagaagaggggacagggggtctccttgtcgaacaccac |
12161203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 12564 - 12499
Alignment:
| Q |
90 |
actaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccacg |
155 |
Q |
| |
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||||||||||||||| || ||||||||||| || || || || ||||| ||||| ||||||||||| |
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|
| T |
12564 |
actaagaacctcttcggcaagacaaaaaaggagaggagataaagggtccccttgacgaacaccacg |
12499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 5155 - 5223
Alignment:
| Q |
112 |
caaaaaagaagcggtgacaatgggtctccttggcgaacaccacgcgaacatgaaaagaacccaacagcc |
180 |
Q |
| |
|
||||||||||| || ||||| || || ||||| ||||| ||||| ||||| || ||||||||||||||| |
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|
| T |
5155 |
caaaaaagaagtggggacaaaggatcgccttgacgaaccccacgagaacaagagaagaacccaacagcc |
5223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 8636213 - 8636245
Alignment:
| Q |
90 |
actaagaacctcttcagctagacaaaaaagaag |
122 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
8636213 |
actaagaacctcttcagctaaacaaaaaagaag |
8636245 |
T |
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