View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_high_12 (Length: 514)
Name: NF15642_high_12
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 136 - 494
Target Start/End: Original strand, 3166674 - 3167034
Alignment:
| Q |
136 |
acatgtgtcaatgaataatgggtcaataactaacgattattaatattgcaactccttcttagatgttcattgaggatatacttcgttaaaatcttacttc |
235 |
Q |
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| T |
3166674 |
acatgtgtcaatgaataatgggtcaataactaacaattattaatattgcaactccttcttagatgttcattgaggatatacttcgttaaaatcttacttc |
3166773 |
T |
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| Q |
236 |
acaaaaattcaatggaaacaattttaatgaaggaaaaatagtataacatcggtttgtgttgaaatctttctcgttnnnnnnnnnnnnnnnnnntttaatg |
335 |
Q |
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| T |
3166774 |
acaaaaattcagtggaaacaattttaataaaggaaaaagagtataacatcggtttgtgttgaaatctttctccttaaaaaccaaaccaaaaaattcaatg |
3166873 |
T |
|
| Q |
336 |
ggataaaactattgtt-aagagaaaggagttcataatacaaaagttttgcttgtcggtaactttgtaatatctcttttgttatactcttcttcaaattac |
434 |
Q |
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| T |
3166874 |
ggataaaactattgttaaagagaaaggagttcataatacaaaagttttgcttgtcggtaactttgtaacatctcttttgttatactcttcttcaaattac |
3166973 |
T |
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| Q |
435 |
cacgtgcttgagatattatc-ttatacaatgaatttaatatcacttgaattttctctgtcc |
494 |
Q |
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| T |
3166974 |
cacgtacttgagatattatctttatacaatgaatttaatatcacttgaattttctctgtcc |
3167034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 3166626 - 3166674
Alignment:
| Q |
6 |
tagtcgagtgagatgaaactcctcaaataaaaacaagaatatgaataaa |
54 |
Q |
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|||| |||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
3166626 |
tagtagagtgatatgaaactcctcaaataagaacaagaatatgaataaa |
3166674 |
T |
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