View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_high_16 (Length: 446)
Name: NF15642_high_16
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 45241032 - 45241455
Alignment:
| Q |
1 |
ccaagaatattgtttaattataatttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaa |
100 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241032 |
ccaaaaatattgtttaattatagtttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaa |
45241131 |
T |
|
| Q |
101 |
aacaataggtttcaccatctcatttaaaatgctatggaatataaaattcaaatattaaaattctgattaattagcttaccnnnnnnntgtcttgattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45241132 |
aacaataggtttcaccatctcatttaaaatgctatggaatatcaaattccaatattaaaattctgattaattagcttaccaaaaaaatgtcttgattaat |
45241231 |
T |
|
| Q |
201 |
tcggcatccgactagttatgtcagttgccnnnnnnnnnnnnnnnnngattccagatatttgttcaacaattttaaacaggagcctatagactagaagcct |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241232 |
tcggcatccgactagttatgtcagttgccaaaaaaaaaaaaaaaaagattccagatatttgttcaacaattttaaacaggagcctatagactagaagccc |
45241331 |
T |
|
| Q |
301 |
tgttggatctttcttgcttccatgcagaaataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241332 |
tgttggatctttcttgcttccatgcagaaataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaa |
45241431 |
T |
|
| Q |
401 |
ttgataaaattgtccttgttgtta |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45241432 |
ttgataaaattgtccttgttgtta |
45241455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 45218993 - 45219147
Alignment:
| Q |
25 |
ttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaaaacaataggtttcaccatctcatt |
124 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45218993 |
ttataacaatatcattcttacattaggctaaaaaagaatttcaaaaaagaaaaatatacttgtatgatcctttcaaaacaatgggtttcaccatctcatt |
45219092 |
T |
|
| Q |
125 |
taaaatgctatggaatataaaattcaaatattaaaattctgattaattagcttac |
179 |
Q |
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||||||| |||||||||| || ||| ||||||||||||||||||||||| ||||| |
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| T |
45219093 |
taaaatggtatggaatatcaacttccaatattaaaattctgattaattatcttac |
45219147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 45219166 - 45219268
Alignment:
| Q |
329 |
aataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaattgataaaattgtccttgttgttaatgt |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45219166 |
aataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaattgataaaattgttcttgttgttaatgt |
45219265 |
T |
|
| Q |
429 |
taa |
431 |
Q |
| |
|
||| |
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|
| T |
45219266 |
taa |
45219268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 10340100 - 10340221
Alignment:
| Q |
26 |
tataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaa----atatacttgtatgatcctttcaaaacaataggtttcaccatctc |
121 |
Q |
| |
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||||||| ||||||||||||||| |||||||| || || |||| |||||| ||||| | ||||||||||||||||||| |||||| | ||||| |
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| T |
10340100 |
tataacagtatcattcttacattttgctaaaaatgattt--aaaaaagaaaacacaatataatcgtatgatcctttcaaaaca---ggtttcgctatctc |
10340194 |
T |
|
| Q |
122 |
atttaaaatgctatggaatataaaatt |
148 |
Q |
| |
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||||||||| |||||||||| ||||| |
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|
| T |
10340195 |
atttaaaatagtatggaatatgaaatt |
10340221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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