View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_high_20 (Length: 383)
Name: NF15642_high_20
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 42842960 - 42842585
Alignment:
| Q |
1 |
attattctcattggtatgatacaatacatatatgcaggataatgctagcaaatagggttataggggt-gagtttctgttccttacaaaaaagacttcnnn |
99 |
Q |
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| T |
42842960 |
attattctcattggtatgatacaatacatatatgcaggataatgctagcaaatagggttataggggttgagtttctgttccttacaaaaa-gacttcaaa |
42842862 |
T |
|
| Q |
100 |
nnnntttatttcctaatatataggtagaactaaagatgagaaaaatataaacattgttatgaaatgtaagcatttcttatttacaaatttcatttgaatc |
199 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42842861 |
aaaatttatttcctaatatataggaagaactaaagatgagaaaaatataaacattgttatgaaatgtaagcatttcttatttacaaatttcattttaatc |
42842762 |
T |
|
| Q |
200 |
actttgttatcaaaatctgacatgcaagtccatctaaaatgtttgcttaaagaacaacaaggaaaaaatggataaagatgaaaattggtaaactaagacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42842761 |
actttgttatcaaaatctgacatgcaagtccatctaaaatgtttgcttaaagaacaacaaggaaaaaatggataaagatgaaaattggtaaactaagacc |
42842662 |
T |
|
| Q |
300 |
ttacaagaagaaacataacttaaaaattagggcacaaattttctctcgcttcgctaatagaaaatatcatattctcc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42842661 |
ttacaagaagaaacataacttaaaaattagggcacaaattttctctcgcttcgctaatagaaaatatcatattctcc |
42842585 |
T |
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