View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_high_21 (Length: 358)

Name: NF15642_high_21
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_high_21
NF15642_high_21
[»] chr7 (22 HSPs)
chr7 (27-253)||(7189533-7189759)
chr7 (38-163)||(34869266-34869391)
chr7 (38-161)||(32630443-32630566)
chr7 (38-163)||(7272885-7273010)
chr7 (38-163)||(12841586-12841711)
chr7 (38-135)||(47848548-47848645)
chr7 (38-170)||(33072793-33072925)
chr7 (64-159)||(25579408-25579503)
chr7 (276-358)||(7189800-7189884)
chr7 (63-195)||(23404231-23404364)
chr7 (38-163)||(35906512-35906637)
chr7 (109-170)||(38606844-38606905)
chr7 (38-163)||(43281522-43281647)
chr7 (73-151)||(21517672-21517750)
chr7 (38-163)||(31005069-31005194)
chr7 (38-163)||(33350117-33350242)
chr7 (117-209)||(46356241-46356334)
chr7 (96-151)||(15681215-15681270)
chr7 (38-149)||(49029136-49029247)
chr7 (48-158)||(11593811-11593921)
chr7 (106-159)||(18637418-18637471)
chr7 (106-159)||(18650853-18650906)
[»] chr4 (25 HSPs)
chr4 (38-159)||(45205159-45205280)
chr4 (38-169)||(35690144-35690275)
chr4 (73-210)||(1211736-1211874)
chr4 (63-150)||(1793319-1793406)
chr4 (48-169)||(27450494-27450615)
chr4 (38-163)||(31960125-31960250)
chr4 (38-162)||(31458875-31458999)
chr4 (63-155)||(39708312-39708404)
chr4 (27-170)||(55578870-55579014)
chr4 (38-161)||(43433766-43433889)
chr4 (48-163)||(48174414-48174529)
chr4 (38-163)||(436075-436200)
chr4 (38-163)||(1777326-1777451)
chr4 (63-171)||(41009686-41009794)
chr4 (38-163)||(23906612-23906737)
chr4 (27-146)||(53707657-53707777)
chr4 (107-169)||(8917708-8917770)
chr4 (96-209)||(46583193-46583307)
chr4 (38-148)||(50662250-50662360)
chr4 (63-152)||(7092555-7092644)
chr4 (38-171)||(52569826-52569959)
chr4 (64-179)||(10775759-10775875)
chr4 (64-179)||(11389549-11389665)
chr4 (97-169)||(47265572-47265644)
chr4 (96-152)||(52280568-52280624)
[»] chr1 (25 HSPs)
chr1 (46-225)||(34827421-34827601)
chr1 (38-170)||(9592573-9592705)
chr1 (42-163)||(9599709-9599830)
chr1 (98-150)||(37463238-37463290)
chr1 (63-194)||(39140328-39140459)
chr1 (48-170)||(51601897-51602019)
chr1 (38-163)||(696115-696240)
chr1 (27-150)||(19936381-19936505)
chr1 (64-154)||(11331401-11331491)
chr1 (64-154)||(11489422-11489512)
chr1 (48-169)||(32083066-32083187)
chr1 (38-170)||(30202441-30202573)
chr1 (27-163)||(22089940-22090077)
chr1 (38-158)||(1210596-1210716)
chr1 (96-155)||(40419493-40419552)
chr1 (29-163)||(43240682-43240817)
chr1 (105-159)||(7921777-7921831)
chr1 (38-144)||(8391637-8391743)
chr1 (65-164)||(38808012-38808107)
chr1 (96-161)||(7814312-7814377)
chr1 (48-151)||(18469401-18469504)
chr1 (42-149)||(52442819-52442926)
chr1 (109-163)||(15085780-15085834)
chr1 (117-163)||(51441155-51441201)
chr1 (64-152)||(4379862-4379950)
[»] chr6 (15 HSPs)
chr6 (49-162)||(6056092-6056205)
chr6 (48-170)||(10100178-10100300)
chr6 (38-163)||(30031102-30031227)
chr6 (63-163)||(2689502-2689602)
chr6 (70-161)||(11295243-11295334)
chr6 (49-152)||(28027147-28027250)
chr6 (48-170)||(5631657-5631779)
chr6 (49-195)||(607972-608119)
chr6 (27-170)||(5258449-5258593)
chr6 (63-150)||(20427972-20428059)
chr6 (51-170)||(33496023-33496142)
chr6 (96-169)||(30679314-30679387)
chr6 (38-163)||(9706622-9706747)
chr6 (38-163)||(28085222-28085347)
chr6 (27-143)||(35043740-35043857)
[»] chr8 (19 HSPs)
chr8 (44-153)||(29735662-29735771)
chr8 (27-209)||(39946656-39946840)
chr8 (38-169)||(37077605-37077736)
chr8 (38-149)||(36545007-36545118)
chr8 (64-159)||(41444633-41444727)
chr8 (38-151)||(13171960-13172073)
chr8 (63-242)||(18124942-18125121)
chr8 (38-158)||(25288753-25288873)
chr8 (38-158)||(25300088-25300208)
chr8 (54-164)||(15215598-15215708)
chr8 (109-163)||(42854386-42854440)
chr8 (27-158)||(12492141-12492273)
chr8 (96-171)||(2796393-2796468)
chr8 (96-154)||(37256084-37256142)
chr8 (38-163)||(36565552-36565677)
chr8 (49-151)||(9905208-9905310)
chr8 (109-170)||(18752255-18752316)
chr8 (38-143)||(36143235-36143340)
chr8 (112-157)||(45377292-45377337)
[»] chr2 (19 HSPs)
chr2 (38-161)||(41763352-41763475)
chr2 (38-195)||(12734519-12734672)
chr2 (38-210)||(3865870-3866043)
chr2 (65-150)||(32443473-32443558)
chr2 (62-154)||(37281962-37282054)
chr2 (38-163)||(38429730-38429855)
chr2 (38-170)||(36183290-36183422)
chr2 (48-225)||(2610311-2610489)
chr2 (100-170)||(6238127-6238197)
chr2 (99-153)||(13149169-13149223)
chr2 (38-163)||(8180626-8180751)
chr2 (38-226)||(45367935-45368124)
chr2 (96-160)||(24583975-24584039)
chr2 (38-168)||(41197539-41197669)
chr2 (38-163)||(451933-452058)
chr2 (42-159)||(7292838-7292955)
chr2 (73-162)||(30743470-30743559)
chr2 (103-147)||(6465584-6465628)
chr2 (64-144)||(36039088-36039168)
[»] chr5 (13 HSPs)
chr5 (73-210)||(27692-27830)
chr5 (48-163)||(1275111-1275226)
chr5 (95-170)||(17340840-17340915)
chr5 (48-170)||(16347699-16347821)
chr5 (38-163)||(2075785-2075910)
chr5 (109-209)||(3301648-3301749)
chr5 (74-159)||(32516165-32516250)
chr5 (110-162)||(32759424-32759476)
chr5 (38-149)||(1287900-1288011)
chr5 (48-163)||(10639143-10639258)
chr5 (63-155)||(28977193-28977285)
chr5 (48-149)||(12492708-12492809)
chr5 (54-163)||(20318833-20318942)
[»] chr3 (12 HSPs)
chr3 (48-195)||(38849907-38850055)
chr3 (43-163)||(27917418-27917538)
chr3 (38-134)||(345022-345118)
chr3 (54-159)||(43695092-43695197)
chr3 (54-194)||(26490130-26490272)
chr3 (27-154)||(30345382-30345506)
chr3 (110-170)||(5168667-5168727)
chr3 (48-168)||(25191220-25191340)
chr3 (41-163)||(54278866-54278988)
chr3 (47-132)||(1425859-1425944)
chr3 (95-251)||(3186526-3186683)
chr3 (38-158)||(33272339-33272459)
[»] scaffold0024 (1 HSPs)
scaffold0024 (38-170)||(82560-82692)
[»] scaffold0018 (1 HSPs)
scaffold0018 (48-163)||(31314-31429)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 7189533 - 7189759
Alignment:
Q  27 gtgtcattcatatcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccac 126  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  7189533 gtgtcattcatatcctatctcgtctaatcttaccggtcattcaacacaacatcctcatctccactatgcttacttgatttttgtgttggttcttaaccac 7189632  T
Q  127 ccaacactctgtaccatacaacatcgtcggtctgactattgtccataaaatttctctttcaatttaagtaatagtttcttatcaaataatacacctgaga 226  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7189633 ccaacactctgtaccatacaacatcgtcggtctgactactgtctataaaatttctctttcaatttaagtaatactttcttatcaaataaaacacctgaga 7189732  T
Q  227 attttctgtatttcaatcactcaacat 253  Q
     ||||||  ||||||| ||||||||||    
T  7189733 cttttctccatttcaaccactcaacat 7189759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 34869391 - 34869266
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| || ||||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  34869391 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctactacacttacttgattctcatgttgactcttaaccgcccaacactccg 34869292  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||||||||    
T  34869291 taccatacaacaacgccggtctgact 34869266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 32630566 - 32630443
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||| | |||||||||||| ||| |||   |||||| | | | |||||||||||||||| |||| ||||| |    
T  32630566 atcctatcatgtctagtcttaccactcatccagctcaacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccagcactccg 32630467  T
Q  138 taccatacaacatcgtcggtctga 161  Q
    ||||||||||||| ||||||||||    
T  32630466 taccatacaacattgtcggtctga 32630443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 7273010 - 7272885
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||| ||| || ||||||   ||||||| |||||||||||||| |||  ||   |||||||||| | ||||||| ||| |||| ||||||||||||    
T  7273010 atcctatcccgtgtagtcttaccgctcatccagcacaacatcctcatctccggtacacttacttgattctcgtgttggctctcaaccgcccaacactctg 7272911  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    || |||||||||| |||||| |||||    
T  7272910 tatcatacaacattgtcggtttgact 7272885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 12841586 - 12841711
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| | |||| | |||||||||||||||||||||| ||  |||   |||||||||| |  |||||  ||||||||||||||||||| |    
T  12841586 atcctatcatgtctagttttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccg 12841685  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||| ||||    
T  12841686 taccatacaacaacgccggtcagact 12841711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 47848645 - 47848548
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactc 135  Q
    |||||||| |||||| |||||| |  ||||||||||||||||||||| ||| |||   ||| || ||| | |||||||||||||||||||||||||||    
T  47848645 atcctatcccgtctagtcttaccacacatccaacacaacatcctcatctcccctagacttattttattctcgtgttggttcttaaccacccaacactc 47848548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 33072925 - 33072793
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| ||||| |||||| | ||||||||| ||||||| |||| ||  |||   ||| |||||| |  |||||  |||||||| ||||||||||||    
T  33072925 atcctatcttgtctagtcttaccactcatccaacgcaacatcatcatctctgctacacttatttgattctcatgttgactcttaaccgcccaacactctg 33072826  T
Q  138 taccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||||||||| || |||||| ||| ||||||    
T  33072825 taccatacaacaacgccggtctaactgttgtcc 33072793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 25579408 - 25579503
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtct 159  Q
    |||||||| |||||||||||| ||| ||| | ||| || ||| | |||||||||||||||| ||||||| || || ||||||||||||| ||||||    
T  25579408 catccaacgcaacatcctcatctcctctacgcttattttattctcgtgttggttcttaaccgcccaacattccgttccatacaacatcgccggtct 25579503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 7189884 - 7189800
Alignment:
Q  276 ttatattctttatggcttaattgatattaagttacatt--aaaagatattaaattctctataaatcataattgatatattattaa 358  Q
    ||||||||||||||  |||||||||||||| ||||||   ||||| | ||||| ||||||| ||||||||||| |||||||||||    
T  7189884 ttatattctttatgtattaattgatattaacttacatataaaaagtttttaaactctctatcaatcataattgttatattattaa 7189800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 23404364 - 23404231
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    ||||||| | |||||||||||| |||| ||   |||||||||| | ||| ||| | |||||| ||||| |||  ||||||||||| ||||||||||||||    
T  23404364 tcatccagcgcaacatcctcatttccaatacacttacttgattctcgtgctggcttttaaccgcccaaaacttcgtaccatacaatatcgtcggtctgac 23404265  T
Q  163 tattgtcc-ataaaatttctctttcaatttaagt 195  Q
    | |||||| ||| |||||  ||||||| ||||||    
T  23404264 tgttgtccgatagaattttcctttcaacttaagt 23404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 35906512 - 35906637
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  ||||||||||||||||||| |    
T  35906512 atcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccg 35906611  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    || ||||||||| || ||||| ||||    
T  35906612 tatcatacaacaacgccggtcggact 35906637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 38606905 - 38606844
Alignment:
Q  109 gtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    ||||||| |||||||| |||||||||| |||||||||||||| | |||||||||| ||||||    
T  38606905 gtgttggctcttaaccgcccaacactccgtaccatacaacattgccggtctgactgttgtcc 38606844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 43281647 - 43281522
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||| | ||||| |||||| | ||||||| | ||||||||||||  || |||   |||||| | | ||| ||||| |||||||| ||||||||||||    
T  43281647 atcctatattgtctagtcttaccactcatccagcgcaacatcctcatccccgctacacttactttactcttgcgttggctcttaaccgcccaacactctg 43281548  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    ||||||||||||| | |||| |||||    
T  43281547 taccatacaacattgccggtttgact 43281522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 21517672 - 21517750
Alignment:
Q  73 caacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatc 151  Q
    ||||||| ||||||||| |||| ||| || ||| | |||||||||||||||| || |||||| ||| ||||||||||||    
T  21517672 caacatcatcatatccattatgcttattttattctcgtgttggttcttaaccgccaaacactatgttccatacaacatc 21517750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 31005194 - 31005069
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| || ||||||| |    
T  31005194 atcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcctaacactccg 31005095  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||| ||||    
T  31005094 taccatacaacaacgccggtcggact 31005069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 33350117 - 33350242
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||  |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  33350117 atcctatcatgtctagtcttaccactcatccaaggcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 33350216  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||| ||||    
T  33350217 taccatacaacaacgccggtcggact 33350242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 46356241 - 46356334
Alignment:
Q  117 tcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatc 209  Q
    |||||||| |||||||||| |||||||||||||  | ||||||||||| ||||| ||| || ||  ||||||| ||||||| || |||||||||    
T  46356241 tcttaaccgcccaacactccgtaccatacaacaatgccggtctgactactgtccgatagaactttcctttcaacttaagtagtactttcttatc 46356334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 15681270 - 15681215
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatc 151  Q
    |||||||| | | ||||||| |||||||| ||||||||||| ||||||||||||||    
T  15681270 ttacttgagtctcgtgttggctcttaaccgcccaacactctataccatacaacatc 15681215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 49029247 - 49029136
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | |||||||||  ||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  49029247 atcctatcatgtctagtcttaccactcatccaacgtaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 49029148  T
Q  138 taccatacaaca 149  Q
    ||||||||||||    
T  49029147 taccatacaaca 49029136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 11593921 - 11593811
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  ||||||||  ||||||||| |||||||||||    
T  11593921 gtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaa 11593822  T
Q  148 catcgtcggtc 158  Q
    || || |||||    
T  11593821 caacgccggtc 11593811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 18637471 - 18637418
Alignment:
Q  106 tttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtct 159  Q
    ||||||||||||||| ||||||||||||| ||   | |||||||||||||||||    
T  18637471 tttgtgttggttcttcaccacccaacactttgcgtcgtacaacatcgtcggtct 18637418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 18650906 - 18650853
Alignment:
Q  106 tttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtct 159  Q
    ||||||||||||||| ||||||||||||| ||   | |||||||||||||||||    
T  18650906 tttgtgttggttcttcaccacccaacactttgcgtcgtacaacatcgtcggtct 18650853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 45205159 - 45205280
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||| |||||| |||||| | |||||||||||||||||||||| ||| ||| | |||||||||| | |||||||||||||||  |||||||||| |    
T  45205159 atcctatcccgtctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttggttcttaactgcccaacactccg 45205258  T
Q  138 taccatacaacatcgtcggtct 159  Q
    ||||||||||||||| ||||||    
T  45205259 taccatacaacatcgccggtct 45205280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 35690275 - 35690144
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||||||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  ||||||||||||||||| ||||| ||      
T  35690275 atcctatctcgtctagtcttactactcatccaacgcaacatcctcatctcggctacacttacttgattctcatgttggttcttaaccacacaacattcca 35690176  T
Q  138 taccatacaacatcgtcggtctgactattgtc 169  Q
    || ||||||||||||||||||| ||| |||||    
T  35690175 tatcatacaacatcgtcggtctaactgttgtc 35690144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 1211736 - 1211874
Alignment:
Q  73 caacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc-a 171  Q
    |||||||||||||||| |||   |||||||||| | ||||||| ||||||||  |||||||||||||||| ||||||||  |||||||||| |||||| |    
T  1211736 caacatcctcatatccgctacacttacttgattctcgtgttggctcttaaccgtccaacactctgtaccacacaacatcaccggtctgactgttgtccga 1211835  T
Q  172 taaaatttctctttcaatttaagtaatagtttcttatca 210  Q
    || || ||  ||||||| ||||||  || ||||||||||    
T  1211836 tagaactttcctttcaacttaagtggtattttcttatca 1211874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 1793406 - 1793319
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacat 150  Q
    |||||||||||||||||||||| ||| |||   |||||||||| | ||||||| |||||||| || ||||||||||| ||||||||||    
T  1793406 tcatccaacacaacatcctcatctccgctacacttacttgattctagtgttggctcttaaccgccaaacactctgtatcatacaacat 1793319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 27450494 - 27450615
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||| | |||||||||||| ||| |||   |||||| | | | ||||||| |||||||  |||||||||| |||||||||||    
T  27450494 gtctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaactgcccaacactccgtaccatacaa 27450593  T
Q  148 catcgtcggtctgactattgtc 169  Q
    ||| |||||||||||| |||||    
T  27450594 cattgtcggtctgactgttgtc 27450615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 31960125 - 31960250
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  31960125 atcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 31960224  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||||||||    
T  31960225 taccatacaacaacgccggtctgact 31960250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 31458999 - 31458875
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||| ||||| |||||||||||| |   |||   |||||| ||||| |||||||||||||||  |||||||||| |    
T  31458999 atcctatcatgtctagtcttaccactcaaccaacgcaacatcctcatctgtgctacacttactttattttcgtgttggttcttaactgcccaacactccg 31458900  T
Q  138 taccatacaacatcgtcggtctgac 162  Q
    ||||||| ||||||| |||||||||    
T  31458899 taccataaaacatcgccggtctgac 31458875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 39708404 - 39708312
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcg 155  Q
    ||||||||| |||||||||||| | |||||   |||||||||| | ||||||  |||||||| |||||||||| |||||||||||||| ||||    
T  39708404 tcatccaacgcaacatcctcatctgcactacacttacttgattctcgtgttgcctcttaaccgcccaacactccgtaccatacaacattgtcg 39708312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 55579014 - 55578870
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| || |||||||| |  |||||| | | || |||||||||||||||||||   |||   ||| |||||| | ||||||||||||||||     
T  55579014 gtgtcattcataatcttatctcgtttcctcttaccacttattcaacacaacatcctcatatatgctacacttaattgattctcgtgttggttcttaaccg 55578915  T
Q  126 cccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||||||   ||||||||||||| || ||||||||| ||||||    
T  55578914 cccaacacttcataccatacaacattgttggtctgactgttgtcc 55578870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 43433889 - 43433766
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| ||||| |||| | | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  43433889 atcctatcttgtctagtcttgccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 43433790  T
Q  138 taccatacaacatcgtcggtctga 161  Q
    |||||||||||| || ||||||||    
T  43433789 taccatacaacaacgccggtctga 43433766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 48174414 - 48174529
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| |||||||||||| |   ||||  ||||||||||||  |||||  ||||||||  ||||||||| |||||||||||    
T  48174414 gtctagtcttaccactcatccaacgcaacatcctcatctttgctatacttacttgattttcatgttgactcttaaccgtccaacactccgtaccatacaa 48174513  T
Q  148 catcgtcggtctgact 163  Q
    || || ||||||||||    
T  48174514 caacgccggtctgact 48174529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 436200 - 436075
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  436200 atcctatcatgtctagtcttacgactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 436101  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||| ||||    
T  436100 taccatacaacaacgccggtcggact 436075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 1777326 - 1777451
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| |   ||||  ||||||||||||  |||||  ||||||||   |||||||| |    
T  1777326 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctttgctatacttacttgattttcatgttgactcttaacctttcaacactccg 1777425  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    || ||||||||| |||||||||||||    
T  1777426 tatcatacaacaacgtcggtctgact 1777451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 41009686 - 41009794
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    ||||||||| |||||||||||| ||| |||   |||||||||| |  |||||| |||||| | |||||||||| |||| |||||||||||  |||||||     
T  41009686 tcatccaacgcaacatcctcatttccgctacacttacttgattctcatgttggctcttaatcgcccaacactccgtactatacaacatcgctggtctgat 41009785  T
Q  163 tattgtcca 171  Q
    | |||||||    
T  41009786 tgttgtcca 41009794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 23906612 - 23906737
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| ||||| |||| | | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||  |    
T  23906612 atcctatcttgtctagtcttgccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacacttcg 23906711  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||| ||||    
T  23906712 taccatacaacaacgccggtcggact 23906737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 53707777 - 53707657
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    ||||||||| || |||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  ||||||||     
T  53707777 gtgtcattcctagtcctatcatgtctagtcttactactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccg 53707678  T
Q  126 cccaacactctgtaccataca 146  Q
    ||||||||||| |||||||||    
T  53707677 cccaacactctctaccataca 53707657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 8917708 - 8917770
Alignment:
Q  107 ttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtc 169  Q
    |||||||||||||||||| || |||||| ||| ||||| |||||||| ||||| || ||||||    
T  8917708 ttgtgttggttcttaaccgcctaacactatgttccataaaacatcgttggtctaacaattgtc 8917770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 46583193 - 46583307
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaag 194  Q
    |||||||||| |  |||||  |||||||| |||||||||| ||||||||||||| || || |||||||  ||||| ||| || ||  ||||||| |||||    
T  46583193 ttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacagcgccgatctgactgctgtccaatagaactttcctttcaaattaag 46583292  T
Q  195 taatagtttcttatc 209  Q
    | ||| |||||||||    
T  46583293 tgatactttcttatc 46583307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 50662360 - 50662250
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||||| | || |||||| |  ||||| ||||||||||||| | ||| ||| | ||| |  |||| ||||||||||||| ||||| |||||||||     
T  50662360 atcctatctcatatagtcttaccacacatcctacacaacatcctcgtctccgctacgcttattatatttatgtgttggttcttcaccactcaacactcta 50662261  T
Q  138 taccatacaac 148  Q
    | |||||||||    
T  50662260 ttccatacaac 50662250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 7092555 - 7092644
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcg 152  Q
    ||||||| |||||||||||||| ||  |||   ||||||| || | |||||||||||||||  || || |||| ||||||||||||||||    
T  7092555 tcatccagcacaacatcctcatctctgctacacttacttgcttctcgtgttggttcttaactgcctaaaactccgtaccatacaacatcg 7092644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 52569826 - 52569959
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| ||||||   ||||||||||||||||||| || ||  |||   |||||||||| |  |||||  ||||||||   |||||||| |    
T  52569826 atcctatcctgtctagtcttacccctcatccaacacaacatcctgatctctgctacacttacttgattctcatgttgactcttaaccgaacaacactccg 52569925  T
Q  138 taccatacaacatcgtcggtctgactattgtcca 171  Q
    |||||||||||| |  |||||||||| |||||||    
T  52569926 taccatacaacaacaccggtctgactgttgtcca 52569959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 10775759 - 10775875
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgact 163  Q
    |||||||||||||||| |||| ||  ||| | ||| || |||||||  || |||||| ||| ||||||||||| | |||||||||||| | ||||| ||     
T  10775759 catccaacacaacatcatcatctctgctacgcttaatttatttttgcattagttctttaccgcccaacactctttcccatacaacatcattggtcttacc 10775858  T
Q  164 attgtcc-ataaaattt 179  Q
     |||||| |||||||||    
T  10775859 gttgtccaataaaattt 10775875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 11389665 - 11389549
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgact 163  Q
    |||||||  |||||||||||| ||  ||| | |||||| ||| | | |||||||||||||| |||||||||   | ||||||||||| |||||||| ||     
T  11389665 catccaatccaacatcctcatctctgctacgcttactttattctcgagttggttcttaaccgcccaacactactttccatacaacattgtcggtcttaca 11389566  T
Q  164 attgtcc-ataaaattt 179  Q
    | ||||| |||||||||    
T  11389565 actgtccgataaaattt 11389549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 47265572 - 47265644
Alignment:
Q  97 tacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtc 169  Q
    ||||||||| | ||||||  ||||||||  |||| ||| |||||||||||||||||  ||||||||| |||||    
T  47265572 tacttgattctcgtgttgactcttaaccgtccaatactttgtaccatacaacatcgctggtctgactgttgtc 47265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 52280568 - 52280624
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcg 152  Q
    |||||| ||| | |||||||||||||||| | |||||| |||||||| |||||||||    
T  52280568 ttactttattctggtgttggttcttaaccgcacaacacactgtaccaaacaacatcg 52280624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 34827421 - 34827601
Alignment:
Q  46 tcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatac 145  Q
    ||||||| |||||| | |||||||||||||||||||||| ||   ||   ||| ||| |||| ||||||||||||||||   ||||||||||||||||||    
T  34827421 tcgtctagtcttaccactcatccaacacaacatcctcatctcagttacacttatttgtttttcgtgttggttcttaaccgaacaacactctgtaccatac 34827520  T
Q  146 aacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatcaaataatacacctgag 225  Q
    |||||||| | ||||||| |||||| ||| |||||  ||||||||||||| | || |||||||||| |||| |||| ||||    
T  34827521 aacatcgttgatctgactgttgtccaatataattttcctttcaatttaagcagtactttcttatcacataaaacacatgag 34827601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 9592705 - 9592573
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  ||||| ||||||||| |||||||||| |    
T  9592705 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgattcttaaccgcccaacactccg 9592606  T
Q  138 taccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||||||||| |||| |||||||||||||||    
T  9592605 taccatacaacaacgtcagtctgactattgtcc 9592573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 9599709 - 9599830
Alignment:
Q  42 tatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtacc 141  Q
    |||| |||||| |||||| | |||||||||||||||||||||| ||  ||| | |||||||||| ||||||||||||| |||| | ||||||| |||| |    
T  9599709 tatcccgtctagtcttaccactcatccaacacaacatcctcatctctgctacgcttacttgattattgtgttggttctcaaccgcacaacactttgtatc 9599808  T
Q  142 atacaacatcgtcggtctgact 163  Q
    |||| ||||||  |||||||||    
T  9599809 ataccacatcgctggtctgact 9599830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 37463238 - 37463290
Alignment:
Q  98 acttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacat 150  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37463238 acttgattcttgtgttggttcttaaccacccaacactctgtaccatacaacat 37463290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 39140459 - 39140328
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    ||||||||| |||||||||||| || |||| | ||||||||||||  || |||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  39140459 tcatccaacgcaacatcctcatctctactacgcttacttgattttcatgatggttcttaactgcccaacactc-gtaccatacaacatcaccggtctgac 39140361  T
Q  163 tattgtcc-ataaaatttctctttcaatttaag 194  Q
    |  ||||| ||| |||||  |||||||||||||    
T  39140360 tgctgtccgatagaatttgcctttcaatttaag 39140328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 51602019 - 51601897
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||| ||| ||||||||||||||| ||||   |||||||||| |  |||||  ||||||||||||||||||| |||||||||||    
T  51602019 gtctagtcttaccactcatctaacgcaacatcctcatatctactacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaa 51601920  T
Q  148 catcgtcggtctgactattgtcc 170  Q
    || || ||||| ||||| |||||    
T  51601919 caacgccggtcggactactgtcc 51601897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 696240 - 696115
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||| | |||||||||||| ||| |||   |||||| | | | ||||||| ||||||||||||||||||| |    
T  696240 atcctatcctgtctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccacccaacactccg 696141  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    ||||||||||||| | ||||||||||    
T  696140 taccatacaacattgccggtctgact 696115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 19936505 - 19936381
Alignment:
Q  27 gtgtcattcatat-cctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    ||||||||| ||| |||||| | |||| |||||| | |||||||||||||||| ||||| ||| ||||| ||| |||||| |  |||||||||||||||     
T  19936505 gtgtcattcctattcctatcccatctagtcttaccactcatccaacacaacattctcatctccgctatgcttatttgattctcatgttggttcttaaccg 19936406  T
Q  126 cccaacactctgtaccatacaacat 150  Q
    ||||||||||| |||| || |||||    
T  19936405 cccaacactctataccctataacat 19936381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 11331401 - 11331491
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtc 154  Q
    ||||||| | ||| ||||||| ||| ||||| | |||||||| |||||||||||| || || | |||||||||||||||||||||||||||    
T  11331401 catccaatataacttcctcatctccgctatgctaacttgattcttgtgttggttcctagccgcacaacactctgtaccatacaacatcgtc 11331491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 11489422 - 11489512
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtc 154  Q
    ||||||| | ||| ||||||| ||| ||||| | |||||||| |||||||||||| || || | |||||||||||||||||||||||||||    
T  11489422 catccaatataacttcctcatctccgctatgctaacttgattcttgtgttggttcctagccgcacaacactctgtaccatacaacatcgtc 11489512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 32083066 - 32083187
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||| | |||||||||||| ||| |||    ||||| | | | ||||||  |||||||| ||||||||||||||||||||||    
T  32083066 gtctagtcttaccactcatccagcgcaacatcctcatctccgctacacatactttactctcgtgttgactcttaaccgcccaacactctgtaccatacaa 32083165  T
Q  148 catcgtcggtctgactattgtc 169  Q
    ||| |||||||||||| |||||    
T  32083166 cattgtcggtctgactgttgtc 32083187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 30202441 - 30202573
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| ||||||||||||    
T  30202441 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctg 30202540  T
Q  138 taccatacaacatcgtcggtctgactattgtcc 170  Q
    ||||| |||||| || ||||| |||| ||||||    
T  30202541 taccacacaacaacgccggtcggactgttgtcc 30202573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 22090077 - 22089940
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| |||||||  ||||| |||||| | |||||||||||| ||||||||| ||  |||   |||||||||| |  |||||  ||||||||     
T  22090077 gtgtcattcataatcctatcctgtctagtcttaccactcatccaacacagcatcctcatctctgctacacttacttgattctcatgttgactcttaaccg 22089978  T
Q  126 cccaacactctgtaccatacaacatcgtcggtctgact 163  Q
    |||||||||| |||||| |||||| || ||||| ||||    
T  22089977 cccaacactccgtaccacacaacaacgccggtcggact 22089940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 1210716 - 1210596
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  1210716 atcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 1210617  T
Q  138 taccatacaacatcgtcggtc 158  Q
    |||||||||||| || |||||    
T  1210616 taccatacaacaacgccggtc 1210596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 40419552 - 40419493
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcg 155  Q
    |||||| || || |||||||||||| ||||||||||||||||| || |||||||||||||    
T  40419552 ttactttatgttcgtgttggttctttaccacccaacactctgttccgtacaacatcgtcg 40419493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 43240682 - 43240817
Alignment:
Q  29 gtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacc 127  Q
    |||||||||| |||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| ||    
T  43240682 gtcattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaacctcc 43240781  T
Q  128 caacactctgtaccatacaacatcgtcggtctgact 163  Q
    |||||||| ||| ||||||||| || ||||| ||||    
T  43240782 caacactccgtatcatacaacaacgccggtcggact 43240817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 7921831 - 7921777
Alignment:
Q  105 ttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtct 159  Q
    |||||||| ||||||| || |||||||||| ||||||||||||||| ||||||||    
T  7921831 ttttgtgtcggttctttacaacccaacactttgtaccatacaacattgtcggtct 7921777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 8391743 - 8391637
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| || || |||||| | ||||||||||||||||| |||| ||| |||   |||||| | | | ||||||  |||||||| ||||||||||||    
T  8391743 atcctatcttgtgtagtcttaccactcatccaacacaacatcttcatctccgctacacttactttactctcgtgttgactcttaaccgcccaacactctg 8391644  T
Q  138 taccata 144  Q
    |||||||    
T  8391643 taccata 8391637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 38808012 - 38808107
Alignment:
Q  65 atccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgacta 164  Q
    |||||||||||||||||||||||| | | | |||||| ||| | ||| |    ||||||| |||||||||||||||| |||||||||| ||||| |||||    
T  38808012 atccaacacaacatcctcatatccgccacgcttacttaattctcgtgct----cttaacctcccaacactctgtaccgtacaacatcgccggtcggacta 38808107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 7814377 - 7814312
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctga 161  Q
    |||||| ||| | ||||||||||||||||| |||||| ||||| |||||||||||| || ||||||    
T  7814377 ttactttattctcgtgttggttcttaaccatccaacattctgttccatacaacatcatcagtctga 7814312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 18469401 - 18469504
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | |||| |||| || |||| |||| ||| ||| |||||||||||| | |||||||||||||||| ||||  |||  ||| |||||||    
T  18469401 gtctagtcttaccactcatacaacgcagcatcgtcatctccgctacgtttacttgattctcgtgttggttcttaaccgcccagtacttagtatcatacaa 18469500  T
Q  148 catc 151  Q
    ||||    
T  18469501 catc 18469504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 52442819 - 52442926
Alignment:
Q  42 tatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtacc 141  Q
    ||||| ||||| |||||| |  ||||||||||||||||||||| ||  ||| | ||| || |||||||||||| ||| | |||||| |||||| ||| ||    
T  52442819 tatcttgtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcattaccaccaaacactatgtccc 52442918  T
Q  142 atacaaca 149  Q
     |||||||    
T  52442919 gtacaaca 52442926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 15085834 - 15085780
Alignment:
Q  109 gtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgact 163  Q
    ||||||| |||||||| |||||||||| |||||||||||||| | |||| |||||    
T  15085834 gtgttggctcttaaccgcccaacactccgtaccatacaacattgccggtttgact 15085780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 51441155 - 51441201
Alignment:
Q  117 tcttaaccacccaacactctgtaccatacaacatcgtcggtctgact 163  Q
    |||||||| |||||||||| ||||||||||||| |||||||| ||||    
T  51441155 tcttaaccgcccaacactccgtaccatacaacaacgtcggtcggact 51441201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 4379950 - 4379862
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcg 152  Q
    ||||||||||||||||||||| ||  ||| | ||  || ||||| |||||||||||| ||  || |||||||||| || ||||||||||    
T  4379950 catccaacacaacatcctcatctcagctaagctttatttattttcgtgttggttctttactgcctaacactctgtcccgtacaacatcg 4379862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 6056092 - 6056205
Alignment:
Q  49 tctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaac 148  Q
    |||| |||||| | ||||||||| |||||||| ||| || |||| | |||||||||||| ||||||||||||||||||||||||||| ||| |||| |||    
T  6056092 tctagtcttaccactcatccaacgcaacatccgcatttctactacgcttacttgattttcgtgttggttcttaaccacccaacactccgtatcatataac 6056191  T
Q  149 atcgtcggtctgac 162  Q
    || |||||||||||    
T  6056192 attgtcggtctgac 6056205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 10100178 - 10100300
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||| ||| |||||||||||| ||| |||   |||||||| | | || |||| |||||||| |||||||||| |||||||||||    
T  10100178 gtctagtcttaccactcatctaacgcaacatcctcatctccgctacacttacttgactctcgtcttggctcttaacctcccaacactccgtaccatacaa 10100277  T
Q  148 catcgtcggtctgactattgtcc 170  Q
    ||||||||||||||||| |||||    
T  10100278 catcgtcggtctgactactgtcc 10100300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 30031227 - 30031102
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||| |||||| |||||| | ||||||||||||||| |||||| ||| |||   | |||||||| |  |||||| |||||||| |||||||||| |    
T  30031227 atcctatcccgtctagtcttaccactcatccaacacaacaacctcatctccgctacactaacttgattctcatgttggctcttaaccgcccaacactccg 30031128  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||||| | |||||||||    
T  30031127 taccatacaacatcattggtctgact 30031102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 2689602 - 2689502
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    ||||||| |||||||||||||| |||||||  ||||||| ||| | | ||||| | |||||| |||||||||| |||||||||||||||| |||||||||    
T  2689602 tcatccatcacaacatcctcatctccactacatttacttaattctcgcgttggctgttaaccgcccaacactccgtaccatacaacatcgacggtctgac 2689503  T
Q  163 t 163  Q
    |    
T  2689502 t 2689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 11295243 - 11295334
Alignment:
Q  70 acacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctga 161  Q
    ||||||||||||||| || |||| | ||||||||||||| ||||||||||||| | |  |||||| ||||||||| |||||| |||||||||    
T  11295243 acacaacatcctcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacatcatcggtctga 11295334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 28027147 - 28027250
Alignment:
Q  49 tctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaac 148  Q
    |||| |||||| | |||||||||| ||||||||| | ||  ||||| |||||||||| |  ||||||||||||||| ||||||||||  |||||||||||    
T  28027147 tctagtcttaccactcatccaacataacatcctcgtctctgctatgcttacttgattctcatgttggttcttaacctcccaacactccataccatacaac 28027246  T
Q  149 atcg 152  Q
    ||||    
T  28027247 atcg 28027250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 5631779 - 5631657
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | |||||||||||||||||||||| | | |||   |||||| | | | | ||||| |||||||| ||||||||||  ||||||||||    
T  5631779 gtctagtcttaccactcatccaacacaacatcctcatcttcgctacacttactttactctcgcgttggctcttaaccgcccaacactccataccatacaa 5631680  T
Q  148 catcgtcggtctgactattgtcc 170  Q
    ||| |||||||||||| ||||||    
T  5631679 cattgtcggtctgactgttgtcc 5631657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 608119 - 607972
Alignment:
Q  49 tctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaac 148  Q
    |||| |||||| | |||||||||  ||||||||||| ||| |||   |||||| ||| | ||||||| |||||||| |||||||||| |||| |||||||    
T  608119 tctagtcttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttggctcttaaccgcccaacactccgtacaatacaac 608020  T
Q  149 atcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagt 195  Q
    || | ||||||||||  ||||| ||| || || ||||||| |||||||    
T  608019 attgccggtctgactgctgtccgatagaacttttctttcagtttaagt 607972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 5258449 - 5258593
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| |||||||| ||||| |||||| | ||||||||| |||||| ||||  ||| |||   ||||||   | | ||||||| ||||  ||     
T  5258449 gtgtcattcataatcctatcttgtctagtcttaccactcatccaacgcaacattctcacctccgctacacttactttgctctcgtgttggctcttcgccg 5258548  T
Q  126 cccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||||||| |||||||||||||| | |||||||||| ||||||    
T  5258549 cccaacactccgtaccatacaacattgccggtctgactgttgtcc 5258593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 20427972 - 20428059
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacat 150  Q
    ||||||| | |||||||||||| ||| |||   ||| |||| | | ||||||| |||||||||||||||||||||||| |||||||||    
T  20427972 tcatccagcgcaacatcctcatctccgctacacttatttgactctcgtgttggctcttaaccacccaacactctgtactatacaacat 20428059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 33496142 - 33496023
Alignment:
Q  51 taatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacat 150  Q
    ||||||||| | ||||||||  ||||||| |||| |||  ||   |||||||||| |  |||||||| ||||||  ||||||||||||||||||||||||    
T  33496142 taatcttaccattcatccaatgcaacatcatcatctccgttacacttacttgattctcatgttggtttttaaccgtccaacactctgtaccatacaacat 33496043  T
Q  151 cgtcggtctgactattgtcc 170  Q
     |  ||||||||| ||||||    
T  33496042 tgcaggtctgactgttgtcc 33496023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 30679387 - 30679314
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtc 169  Q
    |||||||||| | |||||| ||||||||   |||||| | || ||||||||||||||||||||||||| |||||    
T  30679387 ttacttgattctcgtgttgattcttaactgtccaacattatgcaccatacaacatcgtcggtctgactgttgtc 30679314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 9706747 - 9706622
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | |||||||   |||||||||||| ||| |||   |||||| | | | ||||||  ||||||||||| ||||||  |    
T  9706747 atcctatcatgtctagtcttaccactcatccagtgcaacatcctcatctccgctacacttactttactctcgtgttgactcttaaccacctaacacttcg 9706648  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    ||||||||||||| | ||||||||||    
T  9706647 taccatacaacattgccggtctgact 9706622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 28085347 - 28085222
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  ||||| || |||||||||| |    
T  28085347 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttagccgcccaacactccg 28085248  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    ||||||||| || |  ||||||||||    
T  28085247 taccatacagcaacaccggtctgact 28085222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 35043740 - 35043857
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| |||||||  |||||||||||| | ||||||| | ||||||| |||| ||| |||   |||||||| | |  |||||| ||||||||     
T  35043740 gtgtcattcataatcctatcatgtctaatcttaccaatcatccagcgcaacatcttcatctccgctacacttacttgactctcatgttggctcttaaccg 35043839  T
Q  126 cccaacactctgtaccat 143  Q
     ||||||||| |||||||    
T  35043840 tccaacactccgtaccat 35043857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 29735771 - 29735662
Alignment:
Q  44 tctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccat 143  Q
    ||||||||| |||||| | |||||||||||||||||||||| ||||||| | ||| || ||| | ||||||||| |||| ||| ||||||||| ||||||    
T  29735771 tctcgtctagtcttaccattcatccaacacaacatcctcatctccactacgcttatttcattctcgtgttggtttttaatcactcaacactctttaccat 29735672  T
Q  144 acaacatcgt 153  Q
    ||||||||||    
T  29735671 acaacatcgt 29735662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 39946840 - 39946656
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| |||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| | ||||||  ||||||||     
T  39946840 gtgtcattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcgtgttgactcttaaccg 39946741  T
Q  126 cccaacactctgtaccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatc 209  Q
    ||||||| || |||||||||||||||| ||| ||||||  ||||| ||| || ||  ||||||||||||||  || |||||||||    
T  39946740 cccaacattccgtaccatacaacatcgccggcctgactgctgtccgatagaactttcctttcaatttaagtggtactttcttatc 39946656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 37077736 - 37077605
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||||||||| | |||| | ||||||| | |||||||||||| ||| | |   |||||||||| | ||||||| |||||||  |||||||||| |    
T  37077736 atcctatctcgtctagttttaccactcatccagcgcaacatcctcatctccgccacacttacttgattctcgtgttggctcttaactgcccaacactccg 37077637  T
Q  138 taccatacaacatcgtcggtctgactattgtc 169  Q
    ||||||||| ||||| |||||||||| |||||    
T  37077636 taccatacagcatcgacggtctgactgttgtc 37077605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 36545118 - 36545007
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | |||||||||||||||||||||| ||  |||   |||||||||| |  |||||  ||||||||||||||||||| |    
T  36545118 atcctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactcgg 36545019  T
Q  138 taccatacaaca 149  Q
    ||||||||||||    
T  36545018 taccatacaaca 36545007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 41444633 - 41444727
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtct 159  Q
    ||||||||||||||||||||| ||| ||||||||  || ||||||||||||||| || ||  |||||||||| || ||||||||||| ||||||||    
T  41444633 catccaacacaacatcctcatctccgctatgtttcttttatttttgtgttggtt-tttacagcccaacactccgtcccatacaacattgtcggtct 41444727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 13171960 - 13172073
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||| |||||| |||||| |  |||||||  |||||| ||||| ||   | || ||| || |||||| ||||||||||||||| ||||||||||||    
T  13171960 atcctatcccgtctagtcttactacacatccaatgcaacattctcatctctgatgtgcttaatttatttttatgttggttcttaaccgcccaacactctg 13172059  T
Q  138 taccatacaacatc 151  Q
    ||||||||||||||    
T  13172060 taccatacaacatc 13172073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 18125121 - 18124942
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    ||||||| | |||||| ||||| ||| |||   |||||||||| |  |||||| |||||||| |||||||||| |||||||||||||| || ||||||||    
T  18125121 tcatccagcgcaacatgctcatctccgctacacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaacattgttggtctgac 18125022  T
Q  163 tattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatcaaataatacacctgagaattttctgtatttcaa 242  Q
    | |||||| ||| || ||  |||||||  |||||  || |||||||||| |||| |||||||||  ||||||  |||||||    
T  18125021 tgttgtccgatagaactttcctttcaa-ctaagtggtactttcttatcacataaaacacctgaggtttttctccatttcaa 18124942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 25288873 - 25288753
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||||| |||| |||||| | | ||||| | |||||||||||||||  |||   ||| |||||| | ||||||| |||||||| |||||||||| |    
T  25288873 atcctatctcatctagtcttaccactaatccagctcaacatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccg 25288774  T
Q  138 taccatacaacatcgtcggtc 158  Q
    || |||||||||||| |||||    
T  25288773 tagcatacaacatcgccggtc 25288753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 25300208 - 25300088
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||||| |||| |||||| | | ||||| | |||||||||||||||  |||   ||| |||||| | ||||||| |||||||| |||||||||| |    
T  25300208 atcctatctcatctagtcttaccactaatccagctcaacatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccg 25300109  T
Q  138 taccatacaacatcgtcggtc 158  Q
    || |||||||||||| |||||    
T  25300108 tagcatacaacatcgccggtc 25300088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 15215598 - 15215708
Alignment:
Q  54 tcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgt 153  Q
    |||||| | ||||||| |||||||||||||| ||| ||    |||||| | | | ||||||| |||||||| |||||||||| ||||||||||||||  |    
T  15215598 tcttaccactcatccagcacaacatcctcatctccgcttcacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacatttt 15215697  T
Q  154 cggtctgacta 164  Q
    |||||||||||    
T  15215698 cggtctgacta 15215708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 42854386 - 42854440
Alignment:
Q  109 gtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgact 163  Q
    ||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||    
T  42854386 gtgttggctcttaaccgcccaacactccgtaccatacaacattgtcggtctgact 42854440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 12492141 - 12492273
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| |||||||  ||||| |||||| | ||||||||| |||||||||||||||  |||   |||| ||||| |  |||||  ||||||||     
T  12492141 gtgtcattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatatctgctacacttacatgattctcatgttgactcttaaccg 12492240  T
Q  126 cccaacactctgtaccatacaacatcgtcggtc 158  Q
    |||||||||| ||||||| ||||| || |||||    
T  12492241 cccaacactccgtaccatgcaacaacgccggtc 12492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 2796468 - 2796393
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcca 171  Q
    |||||||||| | ||||||  |||||||||||||| |||| |||||||| |||| ||||||||| ||| |||||||    
T  2796468 ttacttgattctcgtgttgactcttaaccacccaagactcggtaccatataacaacgtcggtctaactgttgtcca 2796393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 37256084 - 37256142
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtc 154  Q
    ||||||||||||  |||| ||| ||||| || |||||||||||||||||||||||||||    
T  37256084 ttacttgattttcttgttcgtttttaactactcaacactctgtaccatacaacatcgtc 37256142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 36565552 - 36565677
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| || ||||||||| ||  |||   |||||||||| |  | |||  |||||||| |||||||||| |    
T  36565552 atcctatcctgtctagtcttaccactcatccaacgcatcatcctcatctctgctacacttacttgattctcatattgactcttaaccgcccaacactccg 36565651  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||||||||    
T  36565652 taccatacaacaacgccggtctgact 36565677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 9905208 - 9905310
Alignment:
Q  49 tctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaac 148  Q
    |||| |||||| || |||||||  |||||||||||| |||  |||  | |||| ||| | ||||||||| ||||||  |||||||| |||||||||||||    
T  9905208 tctattcttactagacatccaatgcaacatcctcatctccgttatactaactttattctcgtgttggttattaaccgtccaacactatgtaccatacaac 9905307  T
Q  149 atc 151  Q
    |||    
T  9905308 atc 9905310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 18752255 - 18752316
Alignment:
Q  109 gtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    ||||||| ||||||||  ||| ||||| |||||||||||||| | |||||||||| ||||||    
T  18752255 gtgttggctcttaaccgtccagcactccgtaccatacaacattgccggtctgactgttgtcc 18752316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 36143340 - 36143235
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||||| |||| |||||| |  |  |||||||||||||||||| ||  ||| ||| | || ||| | |||||||||||| ||| ||||||||||||    
T  36143340 atcctatctcatctagtcttaccacacgaccaacacaacatcctcatctctgctacgttgattttattctcgtgttggttcttcaccgcccaacactctg 36143241  T
Q  138 taccat 143  Q
    | ||||    
T  36143240 ttccat 36143235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 45377292 - 45377337
Alignment:
Q  112 ttggttcttaaccacccaacactctgtaccatacaacatcgtcggt 157  Q
    ||||||||||||| ||||| ||| | ||||||||||||||||||||    
T  45377292 ttggttcttaaccgcccaatactttataccatacaacatcgtcggt 45377337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 41763352 - 41763475
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| ||||| |||||| | ||||||| | |||||||||||| ||| |||   |||||| | | | |||||||||||||||| ||||||||||||    
T  41763352 atcctatcttgtctagtcttaccactcatccatcgcaacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccaacactctg 41763451  T
Q  138 taccatacaacatcgtcggtctga 161  Q
    ||||||||||||| | ||||||||    
T  41763452 taccatacaacattgccggtctga 41763475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 12734672 - 12734519
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    |||||||| |||||| |||||| | ||||||| |||||||||||||| |||||||     |||||||| |  |||||| ||| |||| ||||||||||||    
T  12734672 atcctatcccgtctagtcttaccactcatccagcacaacatcctcatctccactac----acttgattctcatgttggctctaaaccgcccaacactctg 12734577  T
Q  138 taccatacaacatcgtcggtctgactattgtccataaaatttctctttcaatttaagt 195  Q
    |||||||||||||||  ||| ||||| ||||| ||| || ||  ||||||| ||||||    
T  12734576 taccatacaacatcgatggtttgactgttgtcgatagaactttcctttcaacttaagt 12734519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 3866043 - 3865870
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| ||||||| |||| ||  |||   |||||||||| |  |||||  ||||||||  ||||||||| |    
T  3866043 atcctatcatgtctagtcttaccactcatccaacgcaacatcatcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccg 3865944  T
Q  138 taccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatca 210  Q
    |||||||||||| ||||||||||||| |||||| ||| || ||  ||||||| ||||||| || ||||||||||    
T  3865943 taccatacaacaacgtcggtctgactgttgtccgatagaactttcctttcaacttaagtagtactttcttatca 3865870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 32443558 - 32443473
Alignment:
Q  65 atccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacat 150  Q
    ||||||||||||||||  |  || | || |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  32443558 atccaacacaacatccctaactctaatacgtttacttgattctcgtgttgattcttaaccacccaacactctgtaccatacaacat 32443473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 37282054 - 37281962
Alignment:
Q  62 gtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtc 154  Q
    ||||||||||||||||||||||| || |||||  |||||||||| | || ||| ||||||||| |  ||||||||||| ||||||||||||||    
T  37282054 gtcatccaacacaacatcctcatctcaactatacttacttgattctcgtattgattcttaaccgcttaacactctgtatcatacaacatcgtc 37281962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 38429855 - 38429730
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||| |||   |||||  | | | |||||||||||||||| |||||||||| |    
T  38429855 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctccgctacacttactctactctcgtgttggttcttaaccgcccaacactccg 38429756  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    ||||||||||||| | |||| |||||    
T  38429755 taccatacaacattgccggtttgact 38429730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 36183422 - 36183290
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  36183422 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 36183323  T
Q  138 taccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||||||||| || ||||| |||| ||||||    
T  36183322 taccatacaacaacgccggtcggactgttgtcc 36183290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 2610489 - 2610311
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| || ||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |||||||||||    
T  2610489 gtctagtcttaccactcatccaacgcagcatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaa 2610390  T
Q  148 catcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatcaaataatacacctgag 225  Q
    || || | |||||||| |||||| ||| || ||  ||||||| ||||||  || |||||||||  |||| |||||||||    
T  2610389 caacgccagtctgactgttgtccgatagaactttcctttcaacttaagtggtactttcttatcgcataaaacacctgag 2610311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 6238127 - 6238197
Alignment:
Q  100 ttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||| | ||||||  ||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||    
T  6238127 ttgattctcgtgttgactcttaaccacccaacactccgtaccatacaacatcgtcagtctaactgttgtcc 6238197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 13149223 - 13149169
Alignment:
Q  99 cttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgt 153  Q
    ||||||||| |||||||||||||||||||  |||||||||||| |||||||||||    
T  13149223 cttgattttcgtgttggttcttaaccacctgacactctgtaccgtacaacatcgt 13149169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 8180751 - 8180626
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | |||||||||||||||||||||| ||  |||   |||||||||| |  |||||  ||||||||  ||||||||| |    
T  8180751 atcctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccg 8180652  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| ||  |||||||||    
T  8180651 taccatacaacaacgctggtctgact 8180626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 45367935 - 45368124
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| ||||| |||||| | ||||||| | ||||||| |||| |||  |||  |||||| | | | ||||||| |||||| | |||| ||||| |    
T  45367935 atcctatcttgtctagtcttaccattcatccagcgcaacatcatcatctccgttatacttactttactctcgtgttggctcttaatcgcccagcactccg 45368034  T
Q  138 taccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttcttatcaaataatacacctgaga 226  Q
    |||| |||||||| |||||||||||| |||||| |||||| ||  ||||||  ||||||  || |||||||||  | || ||||||||||    
T  45368035 taccttacaacattgtcggtctgactgttgtccgataaaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgaga 45368124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 24583975 - 24584039
Alignment:
Q  96 ttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctg 160  Q
    |||||||||| | ||||||  |||||||| ||||||| | |||||||||||||||||||||||||    
T  24583975 ttacttgattctcgtgttgactcttaaccgcccaacattttgtaccatacaacatcgtcggtctg 24584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 41197539 - 41197669
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||| | | |||||||||||| ||| |||   |||||| | | | ||||||| |||||||| ||||||||| ||    
T  41197539 atcctatcatgtctagtcttaccactcatctagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactttg 41197638  T
Q  138 taccatacaacatcgtcggtctgactattgt 168  Q
    ||||||||||||| |  ||||||||| ||||    
T  41197639 taccatacaacattgctggtctgactgttgt 41197669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 451933 - 452058
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||| ||| |||||| ||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  451933 atcctatcatgtctagtcttaccactcatctaacgcaacatactcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 452032  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| |||||||| ||||    
T  452033 taccatacaacaacgtcggtcggact 452058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 7292955 - 7292838
Alignment:
Q  42 tatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtacc 141  Q
    |||||| |||| || ||||| |||||||||||||||| || || || |||| | ||| || || ||  ||||||||||| ||||||||||||  ||| ||    
T  7292955 tatctcatctagtcatacaactcatccaacacaacattcttatttctactacgcttattttatgttcatgttggttcttcaccacccaacaccttgtccc 7292856  T
Q  142 atacaacatcgtcggtct 159  Q
     |||||||| ||||||||    
T  7292855 gtacaacattgtcggtct 7292838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 30743559 - 30743470
Alignment:
Q  73 caacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    |||||||||||| ||||| |   |||||||||| | ||||||| | |||| | || ||| ||| ||||||||||||||||||||||||||    
T  30743559 caacatcctcatctccacaacacttacttgattctcgtgttggcttttaatcgcctaactctccgtaccatacaacatcgtcggtctgac 30743470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 6465628 - 6465584
Alignment:
Q  103 atttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  6465628 atttttgtgttggttcttcaccgcccaacactctgttccttacaa 6465584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 36039168 - 36039088
Alignment:
Q  64 catccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccata 144  Q
    |||||||||||||||| |||| ||  ||| | |||||| ||| | || | | ||||||||||||||||||| |||||||||    
T  36039168 catccaacacaacatcttcatctctgctacgattactttattctcgtttagtttcttaaccacccaacactttgtaccata 36039088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 27830 - 27692
Alignment:
Q  73 caacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtc-ca 171  Q
    |||||||||||| |||  |||| |||||| ||| |  ||||||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||  |    
T  27830 caacatcctcatctccgttatgcttacttaattctcatgttggttcttaaccgcccaacactccgtaccatacaacatcgtctgtccgactattgtcaga 27731  T
Q  172 taaaatttctctttcaatttaagtaatagtttcttatca 210  Q
    || |||||  ||||||| ||||||  || ||||||||||    
T  27730 tagaattttcctttcaacttaagtggtactttcttatca 27692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 1275226 - 1275111
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| |||||||||||| ||  ||||| |||||||||| |  |||||  || ||||| |||||||||| |||||||||||    
T  1275226 gtctagtcttaccactcatccaacgcaacatcctcatctctgctatgcttacttgattctcatgttgactcgtaaccgcccaacactccgtaccatacaa 1275127  T
Q  148 catcgtcggtctgact 163  Q
    || || ||||||||||    
T  1275126 caacgccggtctgact 1275111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 17340840 - 17340915
Alignment:
Q  95 tttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    ||||||||||| | ||||| ||| |||||||||||||||| |||| |||| ||||| |||||||||||||||||||    
T  17340840 tttacttgattctcgtgttagttattaaccacccaacactttgtatcatataacattgtcggtctgactattgtcc 17340915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 16347699 - 16347821
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| |||||||||||| ||| |||   |||||| | | | ||||||| |||||||| | |||||||| |||||||||||    
T  16347699 gtctagtcttaccactcatccaacgcaacatcctcatctccgctacacttacttaactctcgtgttggctcttaaccgctcaacactccgtaccatacaa 16347798  T
Q  148 catcgtcggtctgactattgtcc 170  Q
     ||||||||||||| | ||||||    
T  16347799 tatcgtcggtctgagtgttgtcc 16347821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 2075785 - 2075910
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||| ||||| |||||||| ||||||||| |||||||||||| ||  |||   |||||| ||| |  |||||  |||||||| |||||||||| |    
T  2075785 atcctatcttgtctagtcttacaactcatccaacgcaacatcctcatctctgctacacttacttaattctcatgttgactcttaaccgcccaacactccg 2075884  T
Q  138 taccatacaacatcgtcggtctgact 163  Q
    |||||||||||| || ||||| ||||    
T  2075885 taccatacaacaacgccggtcggact 2075910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 3301749 - 3301648
Alignment:
Q  109 gtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagtaatagtttctta 207  Q
    ||||||| |||||||| |||||||||  |||||||||||||| ||| ||||||||| ||||| ||| || ||  ||||||||||||||  || |||||||    
T  3301749 gtgttggctcttaaccgcccaacacttcgtaccatacaacattgtcagtctgactactgtccgatagaactttcctttcaatttaagtggtactttctta 3301650  T
Q  208 tc 209  Q
    ||    
T  3301649 tc 3301648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 32516165 - 32516250
Alignment:
Q  74 aacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtct 159  Q
    ||||||||||| ||||||| | |||||| ||| | ||||| ||||| | || ||||||||||| | ||||||||||||||||||||    
T  32516165 aacatcctcatctccactacgcttactttattctcgtgttagttctaagccgcccaacactctattccatacaacatcgtcggtct 32516250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 32759476 - 32759424
Alignment:
Q  110 tgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgac 162  Q
    ||||||||||||| |||||||||||||||  |||| |||||||||||||||||    
T  32759476 tgttggttcttaaacacccaacactctgttgcataaaacatcgtcggtctgac 32759424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 1287900 - 1288011
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |    
T  1287900 atcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccg 1287999  T
Q  138 taccatacaaca 149  Q
    ||||||||||||    
T  1288000 taccatacaaca 1288011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 10639258 - 10639143
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||| ||| |||||||||| |||||||||||    
T  10639258 gtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttcaccgcccaacactccgtaccatacaa 10639159  T
Q  148 catcgtcggtctgact 163  Q
    || |||||||| ||||    
T  10639158 caacgtcggtcggact 10639143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 28977193 - 28977285
Alignment:
Q  63 tcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcg 155  Q
    |||||||||||||||| ||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| ||||||||||||| |||||    
T  28977193 tcatccaacacaacatactcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtcg 28977285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 12492708 - 12492809
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | |||||||||  ||||||||||| ||  |||   |||||||||| |  |||||  |||||||| |||||||||| |||||||||||    
T  12492708 gtctagtcttaccactcatccaacgtaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaa 12492807  T
Q  148 ca 149  Q
    ||    
T  12492808 ca 12492809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 20318942 - 20318833
Alignment:
Q  54 tcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgt 153  Q
    |||||| | ||||||||| |||||||||||| ||  |||   |||||||||| |  |||||  |||||||| | |||||||| ||||||||||||| ||     
T  20318942 tcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcgcaacactccgtaccatacaacaacgc 20318843  T
Q  154 cggtctgact 163  Q
    ||||| ||||    
T  20318842 cggtcggact 20318833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 38850055 - 38849907
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||| | |||||||||||| ||  |||   |||||||||| | ||||||  |||||||| ||||||||| ||||||||||||    
T  38850055 gtctagtcttactactcatccagcgcaacatcctcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacactttgtaccatacaa 38849956  T
Q  148 catcgtcggtctgactattgtcc-ataaaatttctctttcaatttaagt 195  Q
    |||||||||| ||||| |||||| ||||||  | |||||||| ||||||    
T  38849955 catcgtcggtgtgactgttgtccgataaaaaatttctttcaacttaagt 38849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 27917538 - 27917418
Alignment:
Q  43 atctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtacca 142  Q
    ||||||||||  ||||| | |||||||||||||||||||||| ||  ||| | |||||||||| | || ||||||||||||  | || |||| |||||||    
T  27917538 atctcgtctaggcttaccactcatccaacacaacatcctcatctctgctacgcttacttgattctcgttttggttcttaactgcacatcactttgtacca 27917439  T
Q  143 tacaacatcgtcggtctgact 163  Q
    |||||||||| |||| |||||    
T  27917438 tacaacatcgccggtgtgact 27917418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 345022 - 345118
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacact 134  Q
    ||||||||||||||| |||||| |   |||||||| |||||||| || ||| ||||| |||||| ||| |||||||||||||||||| | |||||||    
T  345022 atcctatctcgtctagtcttaccacaaatccaacataacatcctaatttccgctatgcttactttattcttgtgttggttcttaaccgctcaacact 345118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 43695092 - 43695197
Alignment:
Q  54 tcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgt 153  Q
    |||||| | ||||||||| |||||||||||| ||   ||   |||||||||| | |||||  |||| ||||||||||||||| ||||||||||||||||     
T  43695092 tcttaccattcatccaacgcaacatcctcatctctgttacacttacttgattctcgtgttaattctcaaccacccaacactccgtaccatacaacatcgc 43695191  T
Q  154 cggtct 159  Q
    ||||||    
T  43695192 cggtct 43695197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 26490272 - 26490130
Alignment:
Q  54 tcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccat--acaacatc 151  Q
    |||||| | ||||||||| |||||||||||| ||| |||   |||||||||| |  ||||||||||||||| |||||||  || ||||||  ||||||||    
T  26490272 tcttaccactcatccaacgcaacatcctcatctccgctacacttacttgattctcttgttggttcttaaccgcccaacatact-taccatacacaacatc 26490174  T
Q  152 gtcggtctgactattgtcc-ataaaatttctctttcaatttaag 194  Q
    | |||||||||| |||||| ||| |||||  |||| ||||||||    
T  26490173 gccggtctgactgttgtccgatataattttcctttaaatttaag 26490130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 30345506 - 30345382
Alignment:
Q  27 gtgtcattcata-tcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaacca 125  Q
    |||||||||||| | |||||  ||| ||||||||   |||||||||||||||||||||| ||| ||||    |||| |||||  |||||||||||||||     
T  30345506 gtgtcattcataattctatcatgtccaatcttaccgctcatccaacacaacatcctcatctccgctat----acttaattttcatgttggttcttaaccg 30345411  T
Q  126 cccaacactctgtaccatacaacatcgtc 154  Q
    |||| ||||| |||| ||| |||||||||    
T  30345410 cccatcactccgtacaatataacatcgtc 30345382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 5168727 - 5168667
Alignment:
Q  110 tgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||| |||||||| |||| ||||| |||||||||||||| | |||||||||| ||||||    
T  5168727 tgttggctcttaaccgcccagcactccgtaccatacaacattgccggtctgactgttgtcc 5168667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 25191340 - 25191220
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||| | |||||||||||| ||  |||   |||||| | | | ||||||  |||||||  ||||||||||||||||||||||    
T  25191340 gtctagtcttaccactcatccagcgcaacatcctcatctctgctacacttactttactctcgtgttgactcttaacagcccaacactctgtaccatacaa 25191241  T
Q  148 catcgtcggtctgactattgt 168  Q
    |||   |||||||||||||||    
T  25191240 catttccggtctgactattgt 25191220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 54278988 - 54278866
Alignment:
Q  41 ctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtac 140  Q
    |||||| ||||| |||||| | | ||||||| |||||||||||| ||  |||   |||| ||||| || |||||  |||||||  |||||||||| ||||    
T  54278988 ctatcttgtctagtcttaccacttatccaacgcaacatcctcatctctgctacacttacctgattcttatgttgactcttaactgcccaacactccgtac 54278889  T
Q  141 catacaacatcgtcggtctgact 163  Q
    ||||||||| ||  |||||||||    
T  54278888 catacaacaacgctggtctgact 54278866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 1425859 - 1425944
Alignment:
Q  47 cgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaaca 132  Q
    ||||||||||||| |  ||||||||||||| |||||||||| |||||| ||| || || ||| || ||||| || |||||| ||||    
T  1425859 cgtctaatcttactatacatccaacacaacgtcctcatatctactatgcttaatttatgtttttgctggttgtttaccaccaaaca 1425944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 3186683 - 3186526
Alignment:
Q  95 tttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactattgtcc-ataaaatttctctttcaatttaa 193  Q
    ||||||||||| | ||||||  |||||| | ||||||||| | || ||||||||||||| |||  |||| |||||| ||| || ||  ||||||| ||||    
T  3186683 tttacttgattctcgtgttgactcttaatcgcccaacactatatatcatacaacatcgttggtgggactgttgtccgatataactttcctttcaacttaa 3186584  T
Q  194 gtaatagtttcttatcaaataatacacctgagaattttctgtatttcaatcactcaac 251  Q
    || ||| ||||||||||  ||| |||| ||| ||| ||||  ||||||| ||| ||||    
T  3186583 gtgatactttcttatcacctaaaacacatgaaaatattcttcatttcaaccacccaac 3186526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 33272339 - 33272459
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | ||||||||  |||||||||||| ||  |||   |||||||||| |  |||||  |||||||  |||||||||| |    
T  33272339 atcctatcatgtctagtcttaccactcatccaatgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaactgcccaacactccg 33272438  T
Q  138 taccatacaacatcgtcggtc 158  Q
    |||||||||||| || |||||    
T  33272439 taccatacaacaacgccggtc 33272459  T

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Target: scaffold0024 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 82692 - 82560
Alignment:
Q  38 atcctatctcgtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctg 137  Q
    ||||||||  ||||| |||||| | |||||||   |||||||||||| ||| ||    |||||||||| |  |||||| |||||||| |||||||||| |    
T  82692 atcctatcatgtctagtcttactactcatccagtgcaacatcctcatctccgctgcacttacttgattctcatgttggctcttaaccgcccaacactccg 82593  T
Q  138 taccatacaacatcgtcggtctgactattgtcc 170  Q
    |||||||||| ||||||||||||||| ||||||    
T  82592 taccatacaagatcgtcggtctgactgttgtcc 82560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 31429 - 31314
Alignment:
Q  48 gtctaatcttacaagtcatccaacacaacatcctcatatccactatgtttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaa 147  Q
    ||||| |||||| | ||||||||| ||||||||| || ||  |||   |||||||||| |  |||||  ||||||||||||||||||| ||||| |||||    
T  31429 gtctagtcttaccactcatccaacgcaacatcctaatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccgtacaa 31330  T
Q  148 catcgtcggtctgact 163  Q
    || || ||||||||||    
T  31329 caccgccggtctgact 31314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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