View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_high_23 (Length: 336)
Name: NF15642_high_23
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 50550492 - 50550190
Alignment:
| Q |
16 |
aaatatatatttcattgatcacaagtatgcttgtagaaaagcaaaatgacaccttgatagttgagattacccaccacaaaacctgtttcggccatgaagc |
115 |
Q |
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| T |
50550492 |
aaatatacatttcatcgatcacaagtatgcttgtagaaaagcaaaatgacaccttgatagttgagattacccaccacaaaacctgtttcggccgtgaagc |
50550393 |
T |
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| Q |
116 |
aaaggatctttgataatatcttgtacaagcagccaataataatcacaatatgaaatggcaagatagtactgagcttcaattcaactcgacgtcagcgtaa |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50550392 |
aaaggatctttgataatatcttttacaagcagccaataataatcacaatatgaaatggcaagatagtagtgagcttcaattcaactcgacgtcagcgtaa |
50550293 |
T |
|
| Q |
216 |
aaatcatttataatgaaattacgcacccacttaactgatatccaattgccccatcgattaatactacaacactactcaatctagatgttggtatagttta |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50550292 |
aaataatttataatgaaattacgcacccacttaactgatatccaattgccccatcgattaatactacaacactactcaatctagatgttggtatagttta |
50550193 |
T |
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| Q |
316 |
atc |
318 |
Q |
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||| |
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| T |
50550192 |
atc |
50550190 |
T |
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