View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_high_24 (Length: 332)

Name: NF15642_high_24
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_high_24
NF15642_high_24
[»] chr8 (4 HSPs)
chr8 (18-263)||(33327180-33327428)
chr8 (270-313)||(33327523-33327566)
chr8 (173-231)||(4674920-4674978)
chr8 (272-320)||(24800355-24800403)
[»] chr4 (6 HSPs)
chr4 (269-320)||(53019594-53019645)
chr4 (270-313)||(12571554-12571597)
chr4 (269-313)||(54349633-54349677)
chr4 (168-223)||(20454557-20454613)
chr4 (269-313)||(35801763-35801807)
chr4 (269-313)||(39162801-39162845)
[»] chr7 (3 HSPs)
chr7 (269-313)||(4588272-4588316)
chr7 (172-231)||(27320234-27320294)
chr7 (270-313)||(218402-218445)
[»] chr5 (1 HSPs)
chr5 (262-320)||(31813142-31813200)
[»] chr3 (2 HSPs)
chr3 (168-231)||(37776810-37776874)
chr3 (269-313)||(39944939-39944983)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 33327180 - 33327428
Alignment:
Q  18 actttgtcagtgggaagggattttaggggagattaaaaacaagaggaggaagatggtatttacgtggctgagtttggttggatgttttggagcaagcctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33327180 actttgtcagtgggaagggattttaggggagattaaaaacaagaggaggaagatggtattgacgtggctgagtttggttggatgttttggagcaagcctt 33327279  T
Q  118 cgtcacgtgtgaaatgaaaattgagaagtgataat---gaaagcaaatagctagacatacattgattttattaataaaagagtgagttatgaagagagta 214  Q
      |||| ||||||||||||||||||||||||||||    | |  || |||  ||||||||||||||||||||||||||||||| || ||| |||||| |     
T  33327280 tctcacatgtgaaatgaaaattgagaagtgataatctacacacaaattagtaagacatacattgattttattaataaaagagttagctataaagagaatg 33327379  T
Q  215 ttgaaaagtgaatgttgttagaacagtctcatagaattactccattttt 263  Q
    ||||||||||||| ||||||||||| ||  ||| |||||||||||||||    
T  33327380 ttgaaaagtgaatattgttagaacattccgataaaattactccattttt 33327428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 33327523 - 33327566
Alignment:
Q  270 aaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  33327523 aaaaatgaaatatttggtcgaactcatgattctattttcaacaa 33327566  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 4674978 - 4674920
Alignment:
Q  173 acattgattttat-taataaaagagtgagttatgaagagagtattgaaaagtgaatgttg 231  Q
    |||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||||||    
T  4674978 acattgatttcatctaataaaagagtgagttttaaagagagtatt-aaaagtgaatgttg 4674920  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 24800355 - 24800403
Alignment:
Q  272 aaatgaaatatttgttcgaactcatgattctattttcaacaacgcaaat 320  Q
    |||| ||||||||| |||||||||||||| ||||||| |||| ||||||    
T  24800355 aaataaaatatttggtcgaactcatgattatattttcgacaaggcaaat 24800403  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 53019594 - 53019645
Alignment:
Q  269 caaaaatgaaatatttgttcgaactcatgattctattttcaacaacgcaaat 320  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  53019594 caaaaatgaaatatttggtcgaactcatgattctattttcgacaaggcaaat 53019645  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 12571597 - 12571554
Alignment:
Q  270 aaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    |||||||||||||||| |||||||||||||||||||||| ||||    
T  12571597 aaaaatgaaatatttggtcgaactcatgattctattttcgacaa 12571554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 54349677 - 54349633
Alignment:
Q  269 caaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  54349677 caaaaatgaaatatttggtcgaactcatgattatattttcgacaa 54349633  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 20454613 - 20454557
Alignment:
Q  168 gacatacattgattttat-taataaaagagtgagttatgaagagagtattgaaaagt 223  Q
    |||||||||||||||||| ||||||||||||||||  |  ||||||| |||||||||    
T  20454613 gacatacattgattttatctaataaaagagtgagtgctagagagagtgttgaaaagt 20454557  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 35801763 - 35801807
Alignment:
Q  269 caaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    ||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  35801763 caaaaatgaaatatttgatcgaactcacgattatattttcgacaa 35801807  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 39162801 - 39162845
Alignment:
Q  269 caaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    ||||||||||||||||  |||||||||||||| ||||||| ||||    
T  39162801 caaaaatgaaatattttgtcgaactcatgattatattttcgacaa 39162845  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 4588272 - 4588316
Alignment:
Q  269 caaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  4588272 caaaaatgaaatatttggtcgaactcatgattatattttcgacaa 4588316  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 27320294 - 27320234
Alignment:
Q  172 tacattgattttatt-aataaaagagtgagttatgaagagagtattgaaaagtgaatgttg 231  Q
    ||||||||||||||| |||||||||||||||  || ||||||| ||||||| |||||||||    
T  27320294 tacattgattttattcaataaaagagtgagtgttggagagagtgttgaaaaatgaatgttg 27320234  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 218402 - 218445
Alignment:
Q  270 aaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    |||||||||||||||| |||||||||||||| | ||||||||||    
T  218402 aaaaatgaaatatttggtcgaactcatgattatgttttcaacaa 218445  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 31813142 - 31813200
Alignment:
Q  262 ttaatatcaaaaatgaaatatttgttcgaactcatgattctattttcaacaacgcaaat 320  Q
    |||| ||||||||||||||||||| ||||||||| |||| | ||||| |||| ||||||    
T  31813142 ttaacatcaaaaatgaaatatttggtcgaactcacgattatgttttcgacaaggcaaat 31813200  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 37776810 - 37776874
Alignment:
Q  168 gacatacattgattttat-taataaaagagtgagttatgaagagagtattgaaaagtgaatgttg 231  Q
    ||||||||||||||| || ||||||||||||||||  || ||| ||| ||||||||||| |||||    
T  37776810 gacatacattgatttcatctaataaaagagtgagtgctggagaaagtgttgaaaagtgagtgttg 37776874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 39944983 - 39944939
Alignment:
Q  269 caaaaatgaaatatttgttcgaactcatgattctattttcaacaa 313  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||    
T  39944983 caaaaatgaaatatttggtcgaactcatgattatgttttcgacaa 39944939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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