View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15642_high_31 (Length: 306)
Name: NF15642_high_31
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 25794075 - 25794347
Alignment:
| Q |
21 |
attgtgtccaatgaggtatatatataattttttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattatttt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794075 |
attgtgtccaatgaggtatatatataattttttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattatttc |
25794174 |
T |
|
| Q |
121 |
ttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaagg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
25794175 |
ttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgatgtgtctagggaagctgccattcaagaagg |
25794274 |
T |
|
| Q |
221 |
ccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcctatgaat |
293 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794275 |
ccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcctatgaat |
25794347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 4314740 - 4314582
Alignment:
| Q |
128 |
atagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaag |
227 |
Q |
| |
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|||||||||| |||||||||| |||||||| |||||| |||| || |||||||| || || | | ||||| |||| ||||||||||||||| ||||| |
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| T |
4314740 |
atagtttgaataaaaaagagatcatgtttcttcattcttggaatgctatatgaagcaacataatatctctagagaaggtgccattcaagaaggtcgaaaa |
4314641 |
T |
|
| Q |
228 |
agaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc |
286 |
Q |
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|||||| ||||||||||||||||||| ||| | |||||||||||||| ||||||||||| |
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|
| T |
4314640 |
agaattgttgatgcttggaaagatatgaataaggaatgtcttatgccgactgaagttcc |
4314582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 70 - 277
Target Start/End: Complemental strand, 41349621 - 41349413
Alignment:
| Q |
70 |
caatatatttgttttaattcaaatgatgtagacatttacatgaattattttttgttgcata--gtttgaacaaaaaagagaacatgtttcctcattcctg |
167 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
41349621 |
caatatatttgtttttattcaaatgatgtgaacatttacatgaagtattattt-ttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttg |
41349523 |
T |
|
| Q |
168 |
gagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtc |
267 |
Q |
| |
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|| || ||||||| ||||| | | ||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||| |
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|
| T |
41349522 |
gaatgctatatgaggcaatataatatctctagagaagttgccattcaagaaggtcgaaagagaattgtagatgcttggaaagatattaataaagaatgtc |
41349423 |
T |
|
| Q |
268 |
ttatgccaac |
277 |
Q |
| |
|
||||| |||| |
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|
| T |
41349422 |
ttatgtcaac |
41349413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 31201391 - 31201657
Alignment:
| Q |
21 |
attgtgtccaatgaggtatatatataattttttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattatttt |
120 |
Q |
| |
|
|||||||||||||||||| |||||||| || || | ||| ||||| ||||||||||||||||||| | | ||||| |||||||| || |||| | |
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| T |
31201391 |
attgtgtccaatgaggtacatatataaaattc-caaataattttctctacaatatatttgttttaattaaca--atgtaaacatttaccaaaactattat |
31201487 |
T |
|
| Q |
121 |
ttgttgcata----gtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaag |
216 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||| |||||||| |||| || ||||||| ||||| | || |||||||||| ||||||||||| |
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|
| T |
31201488 |
ttgttggatatatagtttgaacaagaaagagaacatgttacctcattcttggaatgctatatgaggcaatataatgtctctagggaagctgccattcaag |
31201587 |
T |
|
| Q |
217 |
aaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc |
286 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||| ||| | |||||| ||| |||||||||||||| |
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|
| T |
31201588 |
aaggtcgaaatagaattgctgatgcttggaaagatatgaataaggaatgttttagaccaactgaagttcc |
31201657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 286
Target Start/End: Original strand, 25834770 - 25834944
Alignment:
| Q |
112 |
aattattttttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccat |
211 |
Q |
| |
|
|||||||| ||| || | |||| || || |||||||||||||||| |||||| |||| || || ||||| | ||||| |||||||||||| ||| || |
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|
| T |
25834770 |
aattatttcttggtgtacagttcgagcataaaagagaacatgtttgctcattgttggattgctacatgaagcagtatgatatgtctagggaagctgctat |
25834869 |
T |
|
| Q |
212 |
tcaagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc |
286 |
Q |
| |
|
||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
25834870 |
tcaagaatgccataagggaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttcc |
25834944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 286
Target Start/End: Original strand, 31161720 - 31161931
Alignment:
| Q |
77 |
tttgttttaattcaaatgatgtagacatttacatgaattattttttgttgcata--gtttgaacaaaaaagagaacatgtttcctcattcctggagtgtt |
174 |
Q |
| |
|
||||||||||||||| || ||| | |||||| ||||||||| || |||| ||| ||||||||| |||||||||||| | ||||||||| |||| || | |
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|
| T |
31161720 |
tttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgct |
31161819 |
T |
|
| Q |
175 |
atatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgcc |
274 |
Q |
| |
|
| ||||| | ||| | || |||||||||| | | |||||||||| | |||||| ||| |||||||||||||||| ||| | ||||||||| ||| |
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|
| T |
31161820 |
acatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggcc |
31161919 |
T |
|
| Q |
275 |
aactgaagttcc |
286 |
Q |
| |
|
||| ||| |||| |
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|
| T |
31161920 |
aacagaaattcc |
31161931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 17183081 - 17183254
Alignment:
| Q |
113 |
attattttttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccatt |
212 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| |||||||||||||||| |||| || |||||||| ||||| | | ||||| |||| | | ||| |
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|
| T |
17183081 |
attattttttgttacacagtttgaacataaaagaggacatgtttcctcattcttggaatgctatatgaaggaatacaatatatctagagaagcttctatt |
17183180 |
T |
|
| Q |
213 |
caagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc |
286 |
Q |
| |
|
|||||| ||| ||| ||| || || ||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
17183181 |
caagaatgccaaaaaagagttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttcc |
17183254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 20603118 - 20602962
Alignment:
| Q |
130 |
agtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagag |
229 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||| | || ||||||||||| ||| ||| ||||||| |||| ||| ||||||||| || ||| || |
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|
| T |
20603118 |
agtttgaacagaaaagaggacatgtttgctcattgttagattgttatatgaagcaatttgatatgtctagagaagctgctattcaagaatgcaaaaatag |
20603019 |
T |
|
| Q |
230 |
aattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc |
286 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20603018 |
aatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttcc |
20602962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 20621995 - 20621951
Alignment:
| Q |
242 |
ttggaaagatataaatgaagaatgtcttatgccaactgaagttcc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20621995 |
ttggaaagatataaatgaagaatgtcttaggccaaccaaagttcc |
20621951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 2328541 - 2328642
Alignment:
| Q |
117 |
ttttttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaag |
216 |
Q |
| |
|
|||||| || |||||||||||| ||||||| |||||||| |||||| ||||| || |||||||| |||||| |||| ||||||| ||| ||||||| |
|
|
| T |
2328541 |
ttttttattacatagtttgaacgtaaaagaggacatgtttgctcattgctggattgctatatgaagcaatatggtatgtcaagggaagctgctattcaag |
2328640 |
T |
|
| Q |
217 |
aa |
218 |
Q |
| |
|
|| |
|
|
| T |
2328641 |
aa |
2328642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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