View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15642_high_33 (Length: 296)
Name: NF15642_high_33
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 1271473 - 1271188
Alignment:
| Q |
1 |
cctctcaggtgctaatataaacacatttctcaatgagaaacataataaaaatatatgtacaaatatgtnnnnnnnnn--gtacatgattactgaagagat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1271473 |
cctctcaggtgctaatataaacacatttctcaatgagaaacataataaaaatatatgtacaaatatgtaaaaaaaaaaagtacatgattactgaagagat |
1271374 |
T |
|
| Q |
99 |
taaatctaacctttagttactactggcacacgaggttctggttgttctgactttggactagaatgactaagttgggattgtagaggtgaaaatgcaggag |
198 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1271373 |
taaatctaacctttagttacgactggcacacgaggttctggttgttctgactttggactagaatgactaagttgggattgtagaggtgaaaatgaaggag |
1271274 |
T |
|
| Q |
199 |
cagcacgagaagctgatcgcattgattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccccttttgatatt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1271273 |
cagcacgagaagctgatcgcattgattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccccttttgatatt |
1271188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 1258040 - 1257989
Alignment:
| Q |
222 |
gattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccc |
273 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
1258040 |
gattgaatttttcctttaaaaagaacatataccgtacaaaaatctggtgccc |
1257989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 50441903 - 50441988
Alignment:
| Q |
195 |
ggagcagcacgagaagctgatcgcattgattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccccttttga |
280 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50441903 |
ggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgtacaaaaatctggtgccccttttga |
50441988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 50446905 - 50446979
Alignment:
| Q |
206 |
agaagctgatcgcattgattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccccttttga |
280 |
Q |
| |
|
|||||| | ||||||||||||||| ||||| || |||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
50446905 |
agaagcaggtcgcattgattgaatctttccattgccaatgacatagactgtacagaaatctggtgccccttttga |
50446979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University