View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_high_34 (Length: 281)

Name: NF15642_high_34
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_high_34
NF15642_high_34
[»] chr7 (14 HSPs)
chr7 (1-281)||(4864336-4864616)
chr7 (35-276)||(4653915-4654153)
chr7 (39-280)||(4696632-4696870)
chr7 (38-263)||(4845453-4845675)
chr7 (35-272)||(4783273-4783507)
chr7 (35-272)||(4815702-4815936)
chr7 (103-279)||(4711578-4711751)
chr7 (54-276)||(4637276-4637495)
chr7 (39-276)||(4673122-4673356)
chr7 (39-171)||(4644216-4644348)
chr7 (202-272)||(4644130-4644200)
chr7 (109-171)||(4631451-4631513)
chr7 (230-276)||(4667360-4667406)
chr7 (39-80)||(4711526-4711567)
[»] chr4 (1 HSPs)
chr4 (202-276)||(18925344-18925418)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 4864616 - 4864336
Alignment:
Q  1 tcaaaactttgaaccttcgaaagcannnnnnncagttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagat 100  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864616 tcaaaactttgaaccttcgaaagcatttttttcagttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagat 4864517  T
Q  101 ggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864516 ggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatcctt 4864417  T
Q  201 attatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattgcacaaacctcaatgacccaaaatatt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4864416 attatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatatt 4864336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 4654153 - 4653915
Alignment:
Q  35 gttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaa 134  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||     
T  4654153 gttgaagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggattcatgatgatggggaaacaatcaccaaagaatattgcatccaag 4654054  T
Q  135 tcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtc 234  Q
    || || | ||| ||||||||||||||||||||||||   |||| || | ||| || ||||||||||||||||| |||||||||||||| ||||| |||||    
T  4654053 tccaaccgaataagaagctaaacataactttcattc---ccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtc 4653957  T
Q  235 tatgccttcttttctatattgcacaaacctcaatgacccaaa 276  Q
    ||||||||||||||| |||| | |||||||||||| ||||||    
T  4653956 tatgccttcttttctctattactcaaacctcaatgccccaaa 4653915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 280
Target Start/End: Original strand, 4696632 - 4696870
Alignment:
Q  39 aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa 138  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||| |  || | ||||  ||||||||||||||||||||||||||||||| |||    
T  4696632 aagtaaacaacaacgttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaagaatattgcattcaaaccaa 4696731  T
Q  139 atcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatg 238  Q
    | ||||||||||| |||||||||||||||||||   ||  || ||||| || ||||||||||||||||| |||||||| ||||||||||| ||||| |||    
T  4696732 accaaatgagaagttaaacataactttcattcc---cagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatg 4696828  T
Q  239 ccttcttttctatattgcacaaacctcaatgacccaaaatat 280  Q
    ||||||||||| |||| ||||||||||| |||||||||||||    
T  4696829 ccttcttttctctattacacaaacctcagtgacccaaaatat 4696870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 38 - 263
Target Start/End: Original strand, 4845453 - 4845675
Alignment:
Q  38 gaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatca 137  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||| || | ||||||||| |||||||||||||||||||| ||||    
T  4845453 gaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttcatgacgaggtggaaaaaattaccaaagaatattgcattcagatca 4845552  T
Q  138 aatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctat 237  Q
    || |||||| ||||||||||||||||||| |||||   || || |||||  |||  ||||||| |||||| ||| |||| ||||| ||||| ||||| ||    
T  4845553 aaccaaatgggaagctaaacataactttctttccg---aacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgat 4845649  T
Q  238 gccttcttttctatattgcacaaacc 263  Q
    |||||||||||| |||| ||||||||    
T  4845650 gccttcttttctctattacacaaacc 4845675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 4783273 - 4783507
Alignment:
Q  35 gttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaa 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||| | |  | |||  ||||||||||| ||| ||||    
T  4783273 gttgaagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaa 4783372  T
Q  135 tcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtc 234  Q
    ||||| |||| |||||||||||||||||||||||||   |||| || | ||| ||||  | ||||  |||||| |||||||| ||||| ||||| |||||    
T  4783373 tcaaaccaaacgagaagctaaacataactttcattc---ccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtc 4783469  T
Q  235 tatgccttcttttctatattgcacaaacctcaatgacc 272  Q
    ||||||||||||||| |||| ||||||||||| |||||    
T  4783470 tatgccttcttttctctattacacaaacctcagtgacc 4783507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 4815702 - 4815936
Alignment:
Q  35 gttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaa 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||| | |  | |||  ||||||||||| ||| ||||    
T  4815702 gttgaagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaa 4815801  T
Q  135 tcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtc 234  Q
    ||||| |||| |||||||||||||||||||||||||   |||| || | ||| ||||  | ||||  |||||| |||||||| ||||| ||||| |||||    
T  4815802 tcaaaccaaacgagaagctaaacataactttcattc---ccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtc 4815898  T
Q  235 tatgccttcttttctatattgcacaaacctcaatgacc 272  Q
    ||||||||||||||| |||| ||||||||||| |||||    
T  4815899 tatgccttcttttctctattacacaaacctcagtgacc 4815936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 4711578 - 4711751
Alignment:
Q  103 ggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttat 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||    
T  4711578 ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttat 4711674  T
Q  203 tatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattgcacaaacctcaatgacccaaaata 279  Q
    ||||| |||||||| ||||| ||| | |||||||||||||||||||| |||| |||  |||| ||||||||||||||    
T  4711675 tatgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaata 4711751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 276
Target Start/End: Complemental strand, 4637495 - 4637276
Alignment:
Q  54 ttacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagct 153  Q
    |||||||||||||||||||||||||||  |||||| |  ||   ||||  |||||||||||||||||||||||||| ||||||||| ||||||| ||| |    
T  4637495 ttacccttcttaaaaacttcaaccctttgctttggctctattttgatgacgaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagtt 4637396  T
Q  154 aaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatat 253  Q
    |||||||||||||||||   | || |  ||||| ||||||||||||| |||||| || ||||| || || ||||| ||||| |||||||||||||| |||    
T  4637395 aaacataactttcattc---ctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtcaatgccttcttttctctat 4637299  T
Q  254 tgcacaaacctcaatgacccaaa 276  Q
    | |||||||||||||||||||||    
T  4637298 tacacaaacctcaatgacccaaa 4637276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 4673356 - 4673122
Alignment:
Q  39 aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa 138  Q
    |||| |||||||| ||||||||||||||||||||||||||||  ||||||||||||||  ||| ||||| |||||||||||||| ||| || ||||||||    
T  4673356 aagttaacaacaatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaaacaatcaccaaagaattttgtatccaaatcaa 4673257  T
Q  139 atcaaatgagaagctaaacataactttcattccggccaataat-ataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctat 237  Q
      | ||||||||||||||||||| |||||||    ||||  || || ||  ||||||||  | | ||||| |||||||| ||||| ||| | ||||| ||    
T  4673256 gcccaatgagaagctaaacataaatttcatt----ccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgtcaat 4673161  T
Q  238 gccttcttttctatattgcacaaacctcaatgacccaaa 276  Q
    |||||||||||| |||| ||||||||||| |||||||||    
T  4673160 gccttcttttctctattacacaaacctcagtgacccaaa 4673122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 4644348 - 4644216
Alignment:
Q  39 aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa 138  Q
    |||||||||||||  | ||||||||| ||||||||||||||||||||||| ||||| | |||| | | || |||| |||||| |||||||| ||||| ||    
T  4644348 aagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatccaaattaa 4644249  T
Q  139 atcaaatgagaagctaaacataactttcattcc 171  Q
    | |||||||||||||||||||||||||||||||    
T  4644248 aacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 4644200 - 4644130
Alignment:
Q  202 ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattgcacaaacctcaatgacc 272  Q
    |||||| |||||||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||| |||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgacc 4644130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
Q  109 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 171  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 4667406 - 4667360
Alignment:
Q  230 gtgtctatgccttcttttctatattgcacaaacctcaatgacccaaa 276  Q
    ||||||||||| |||||||| |||| ||||||||||| |||||||||    
T  4667406 gtgtctatgccgtcttttctctattacacaaacctcagtgacccaaa 4667360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 4711526 - 4711567
Alignment:
Q  39 aagtaaacaacaaaattacccttcttaaaaacttcaaccctt 80  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  4711526 aagtaaacaacaatcttacccttcttaaaaacttcagccctt 4711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 18925344 - 18925418
Alignment:
Q  202 ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattgcacaaacctcaatgacccaaa 276  Q
    |||||| ||||| || ||||| ||  ||||||| |||||||||||||| |||| |||||||||||||||| ||||    
T  18925344 ttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaa 18925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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