View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15642_high_38 (Length: 266)
Name: NF15642_high_38
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 256
Target Start/End: Original strand, 38094007 - 38094199
Alignment:
| Q |
64 |
tcaattgagtggaagccactccaattgtatgagctaacaacaaatatctaatttgagcaagacaaagctcgtaaataatcaagaatccatctctattcat |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
38094007 |
tcaattgagtggaagccactccaattgtatgggctaacaacaaatatctaatttgagcaagacaaagctcataaacaatcaagaatccatctttattcat |
38094106 |
T |
|
| Q |
164 |
attactaatacatgttggccaaagcatatctccacacttactagcttcagacaaactctaacctctcaatccaacacttcccaccgccctatg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
38094107 |
attactaatacatgttggccaaagcatatctccacacttactagcttcagacaaactctaacctctcaatccaatacttcccaccgccttatg |
38094199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 24368925 - 24368975
Alignment:
| Q |
17 |
acaaacaatgacattactttgctcaattaaatccttaacatcttgaatcaa |
67 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
24368925 |
acaaacaatgacattactttacccaattaaatccttaacatcttgaatcaa |
24368975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 38093704 - 38093754
Alignment:
| Q |
17 |
acaaacaatgacattactttgctcaattaaatccttaacatcttgaatcaa |
67 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
38093704 |
acaaacaatgacattacttaacccaattaaatccttaacatcttgaatcaa |
38093754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 24019602 - 24019651
Alignment:
| Q |
18 |
caaacaatgacattactttgctcaattaaatccttaacatcttgaatcaa |
67 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
24019602 |
caaacaatgacattatgttgcccaattaaatccttaacatcttgaatcaa |
24019651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 41387474 - 41387426
Alignment:
| Q |
19 |
aaacaatgacattactttgctcaattaaatccttaacatcttgaatcaa |
67 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| || ||||||||||| |
|
|
| T |
41387474 |
aaacaatgacattggtctgctcaattaaatccttcacgtcttgaatcaa |
41387426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4403264 - 4403216
Alignment:
| Q |
19 |
aaacaatgacattactttgctcaattaaatccttaacatcttgaatcaa |
67 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || |||||||||||||| |
|
|
| T |
4403264 |
aaacaatgacattattttggtcaatcaaatctttcacatcttgaatcaa |
4403216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 39407660 - 39407612
Alignment:
| Q |
19 |
aaacaatgacattactttgctcaattaaatccttaacatcttgaatcaa |
67 |
Q |
| |
|
|||||||||||||| ||||||| || ||||| || |||||||||||||| |
|
|
| T |
39407660 |
aaacaatgacattattttgctccatcaaatctttcacatcttgaatcaa |
39407612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University