View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_high_40 (Length: 258)
Name: NF15642_high_40
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 59285 - 59513
Alignment:
| Q |
10 |
tgagatgaagcagaagaagaagcaaaaagagcttagggcaggaaatcctatagctgaaacttccaataaacaagaatctaaaaatggagacataaaagcc |
109 |
Q |
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| T |
59285 |
tgagaagaagcagaagaagaagcaaaaagagcttagggcaggaaattctatagctgaaacttccaataaacaagaatctaaaaatggagacataaaagcc |
59384 |
T |
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| Q |
110 |
aagaaaatagttgttgagaatgatggtga------tgatgacgacgacgacgatgtcattttaagctctaaaagaagaaaaaggtagtaaaatagaaagc |
203 |
Q |
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| T |
59385 |
aagaaaatagttgttgagaatgatggtgatgatgttgatgatgacgacgacgatgtcattttaagctctaaaagaagaaaaaggtagtaaaatagaaagc |
59484 |
T |
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| Q |
204 |
ctcgcattggctataacagttttttaaca |
232 |
Q |
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| T |
59485 |
ctcgcattggctataacagttttttaaca |
59513 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 51217718 - 51217766
Alignment:
| Q |
136 |
tgatgatgacgacgacgacgatgtcattttaagctctaaaagaagaaaa |
184 |
Q |
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| T |
51217718 |
tgatgatgacgacgacgacgacttcattttaagtcataaaagaagaaaa |
51217766 |
T |
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