View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_high_9 (Length: 616)

Name: NF15642_high_9
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_high_9
NF15642_high_9
[»] scaffold0028 (2 HSPs)
scaffold0028 (8-599)||(110107-110698)
scaffold0028 (20-150)||(127698-127828)
[»] chr2 (10 HSPs)
chr2 (43-331)||(21189423-21189710)
chr2 (43-316)||(2590522-2590800)
chr2 (43-137)||(18739113-18739207)
chr2 (43-168)||(14433570-14433696)
chr2 (46-161)||(27083068-27083183)
chr2 (43-121)||(1043167-1043244)
chr2 (81-137)||(35969279-35969335)
chr2 (75-147)||(10941418-10941488)
chr2 (75-147)||(10947287-10947357)
chr2 (88-147)||(10938057-10938114)
[»] chr1 (12 HSPs)
chr1 (34-329)||(9111353-9111646)
chr1 (43-142)||(12141649-12141748)
chr1 (43-168)||(24981133-24981258)
chr1 (43-168)||(4242540-4242665)
chr1 (34-142)||(43254127-43254235)
chr1 (43-137)||(38825479-38825574)
chr1 (46-170)||(49387575-49387699)
chr1 (43-114)||(1953709-1953780)
chr1 (43-137)||(47580416-47580512)
chr1 (43-164)||(38828662-38828784)
chr1 (43-169)||(21501220-21501346)
chr1 (100-137)||(51465563-51465600)
[»] chr4 (10 HSPs)
chr4 (28-264)||(895449-895685)
chr4 (43-137)||(6667721-6667815)
chr4 (58-147)||(13010525-13010614)
chr4 (43-142)||(44643474-44643572)
chr4 (44-158)||(31767429-31767543)
chr4 (65-151)||(20058091-20058177)
chr4 (43-137)||(6671393-6671481)
chr4 (44-167)||(13250497-13250621)
chr4 (44-164)||(43287870-43287991)
chr4 (34-167)||(11914035-11914167)
[»] chr3 (9 HSPs)
chr3 (122-356)||(16366212-16366445)
chr3 (22-167)||(19930008-19930152)
chr3 (43-169)||(26445064-26445190)
chr3 (65-167)||(42253534-42253635)
chr3 (34-169)||(2353208-2353343)
chr3 (34-159)||(9372192-9372317)
chr3 (43-119)||(11634190-11634267)
chr3 (76-164)||(19935212-19935297)
chr3 (44-165)||(42256790-42256915)
[»] chr8 (12 HSPs)
chr8 (43-359)||(21185101-21185417)
chr8 (43-137)||(1788901-1788995)
chr8 (43-151)||(39655687-39655795)
chr8 (43-168)||(17028376-17028501)
chr8 (43-168)||(17558812-17558937)
chr8 (103-166)||(17088743-17088806)
chr8 (62-147)||(38678725-38678809)
chr8 (101-147)||(38676893-38676939)
chr8 (59-108)||(21347149-21347198)
chr8 (77-142)||(31183756-31183821)
chr8 (276-320)||(21184455-21184499)
chr8 (43-87)||(38676329-38676373)
[»] scaffold0076 (1 HSPs)
scaffold0076 (43-169)||(6730-6856)
[»] chr5 (5 HSPs)
chr5 (20-229)||(13291951-13292160)
chr5 (44-151)||(26703005-26703113)
chr5 (44-151)||(26972738-26972846)
chr5 (42-169)||(39292119-39292246)
chr5 (43-169)||(18594836-18594962)
[»] chr6 (8 HSPs)
chr6 (43-137)||(19697847-19697941)
chr6 (58-142)||(6591846-6591930)
chr6 (55-170)||(24044902-24045017)
chr6 (44-160)||(2936127-2936243)
chr6 (52-170)||(24041599-24041717)
chr6 (79-132)||(15518074-15518127)
chr6 (34-119)||(14579631-14579716)
chr6 (83-142)||(19973730-19973788)
[»] scaffold0014 (1 HSPs)
scaffold0014 (43-137)||(82643-82737)
[»] chr7 (11 HSPs)
chr7 (66-168)||(22301122-22301224)
chr7 (43-137)||(39426453-39426547)
chr7 (43-137)||(11674023-11674116)
chr7 (43-137)||(31210077-31210171)
chr7 (43-142)||(31206623-31206722)
chr7 (43-151)||(3850527-3850636)
chr7 (44-170)||(13815760-13815886)
chr7 (20-142)||(15569564-15569686)
chr7 (43-167)||(2609574-2609698)
chr7 (44-167)||(32352401-32352524)
chr7 (36-195)||(15169949-15170107)
[»] scaffold0293 (1 HSPs)
scaffold0293 (43-122)||(4942-5021)
[»] scaffold0216 (1 HSPs)
scaffold0216 (21-102)||(12112-12194)
[»] scaffold0933 (1 HSPs)
scaffold0933 (81-170)||(804-892)


Alignment Details
Target: scaffold0028 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 8 - 599
Target Start/End: Original strand, 110107 - 110698
Alignment:
Q  8 agtgtatatgtacgagttgatctataacctctaacatgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaat 107  Q
    ||||||||| | ||||||| ||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110107 agtgtatatattcgagttgttctgtcacctctgacatgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaat 110206  T
Q  108 cctcaaggacagtgactatgtcacgcctcatgttagataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcatta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110207 cctcaaggacagtgactatgtcacgcctcatgttagataacagattactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcatta 110306  T
Q  208 ccagcctcaaatcaccgcaattttaaagctagataagtctaatgatctctctcttttgcttattgattttaatggttatatgtttatgctgatttttatt 307  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  110307 ccagcctcaaatcaccgcaattttaaagatagataagtctaacgatctctttcttttgcttattgattttaatgcttatatgtttatgctgatttttatt 110406  T
Q  308 ttgagataattcacatgtcaataagttaacaacaatcttgaggattttattaattgtttaatcgctgccgatgctagggtttccatcaagttgctatctg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110407 ttgagataattcacatgtcaataagttaacaacaatcttgaggattttattaattgtttaatcgctgccgatgctagggtttccatcaagttgctatctg 110506  T
Q  408 cgaatggaggaacgtataataaaatggctgaaattaagcgtgttaaagagaagatcacagtttgtgttaaccggtgaaattgcagagaatttaattttga 507  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110507 tgaatggaggaacgtataataaattggctgaaattaagcgtgttaaagagaagatcacagtttgtgttaaccggtgaaattgcagagaatttaattttga 110606  T
Q  508 tcgtgatatttgttgaaatgaaatcctgtgttcaattgataaagcaagatgcgatggaaatcattgtaagttttgaattattctccctttca 599  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  110607 ccgtgatatttgttgaaatgaaatcctgtgttcaattgataaagcaagatgcgatggaaatctttgtaagttttgaattattctccctttca 110698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 127698 - 127828
Alignment:
Q  20 cgagttgatctataacctctaacatgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacag 119  Q
    ||||||| ||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  127698 cgagttgttctgtcacctctgacatgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacag 127797  T
Q  120 tgactatgtcacgcctcatgttagataacag 150  Q
    |||||||||||||||||| ||||||||||||    
T  127798 tgactatgtcacgcctcaggttagataacag 127828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 43 - 331
Target Start/End: Original strand, 21189423 - 21189710
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | ||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21189423 atgattcataacggggaataactgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 21189522  T
Q  143 gataa-cagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcattaccagcctcaaatcaccgcaattttaaagctagat 241  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  21189523 gataaacagtttactattttgcaggttattgctattcatggtttggcgtttgtttgctcttctttaccagcctcaaatcaccgcaattttaaagatagat 21189622  T
Q  242 aagtctaatgatctctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaataa 331  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21189623 aagtctaatga--tctctcttttgcttattgattttaatgcttatatgtttatgctgattgttattttgagataattcacatgtcaataa 21189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 43 - 316
Target Start/End: Original strand, 2590522 - 2590800
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2590522 atgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgtcacgcctcaggtta 2590621  T
Q  143 gataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgc-tcttcattaccagcctcaaatcaccgcaattttaaagctagat 241  Q
       ||| |||||| || |||||||| ||  |  |||| |  ||  ||||||||| | ||  ||||||| || |||| ||||||||| |||||||| ||||    
T  2590622 ttgaacggtttaccatgttgcaggtcatctccgttcatgacttcttgtttgtttacttcaccattaccggcttcaagtcaccgcaa-tttaaagc-agat 2590719  T
Q  242 aagtctaatgatctctctcttttgcttattgatttt------aatggttatatgtttatgctgatttttattttgagataa 316  Q
    |||||||||||||||||||||||| |||||| ||||      |||| ||||||||||||||| ||| |||||| |||||||    
T  2590720 aagtctaatgatctctctcttttgtttattgttttttttttaaatgcttatatgtttatgctcattattatttagagataa 2590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 18739207 - 18739113
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | ||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18739207 atgattcataacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 18739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 14433696 - 14433570
Alignment:
Q  43 atgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    |||||||||| | ||||||||| ||||||||||||||| ||| ||   |||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  14433696 atgattcataacggggaagaacatgttgtatcttgggaagatgtgtacttatgaggcggataaaatccacaaggacagtgactatgtcacgcctcaggtt 14433597  T
Q  142 agataacagtttactattttgcaggtt 168  Q
    | |||||||| || | |||||||||||    
T  14433596 acataacagtgtattgttttgcaggtt 14433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 27083183 - 27083068
Alignment:
Q  46 attcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttaga 144  Q
    |||||||| |||||||||| ||||||||| |||||||||||||| || |||||||||| |||||||  ||||||| |||| ||||| ||||||| ||| |    
T  27083183 attcatattagggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcggat-aaatccttcaggacagcgactttgtcatgcctcatcttata 27083085  T
Q  145 taacagtttactatttt 161  Q
    |||||||||| ||||||    
T  27083084 taacagtttattatttt 27083068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 1043167 - 1043244
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtg 121  Q
    |||||||||| | ||||||||| |||||||| ||||||||||||||  |||||| ||||||||||||||||||||||||    
T  1043167 atgattcataac-gggaagaacggttgtatcctgggaggatatgcgcctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 35969335 - 35969279
Alignment:
Q  81 gatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||    
T  35969335 gatatgcgcttttgaggcggataaaatcttcaaggacagtgactatgtcacgcctca 35969279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 10941488 - 10941418
Alignment:
Q  75 tgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 147  Q
    |||||||||||||| |||||||||| || ||||||| ||||||||||||| ||||||||||||||||| ||||    
T  10941488 tgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact-tgtcacgcctcatgttatataa 10941418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 10947357 - 10947287
Alignment:
Q  75 tgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 147  Q
    |||||||||||||| |||||||||| || ||||||| ||||||||||||| ||||||||||||||||| ||||    
T  10947357 tgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact-tgtcacgcctcatgttatataa 10947287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 10938114 - 10938057
Alignment:
Q  88 gtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 147  Q
    |||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||| ||||    
T  10938114 gtttatgaggcgaataaa-tccttaaggacagtgact-tgtcacgcctcatgttatataa 10938057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 329
Target Start/End: Complemental strand, 9111646 - 9111353
Alignment:
Q  34 acctctaacatgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgc 133  Q
    |||||| | |||||| ||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9111646 acctctgatatgatttatatcagtgaagaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgc 9111547  T
Q  134 ctcatgttagataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcattaccagcctcaaatcaccgcaattttaa 233  Q
    ||||  ||| |||||||||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  9111546 ctcagattatataacagtttactattttgcaggttattgctattcatggagtgatgtttgtttgctcttcattacgagcctcaaatcaccgcaattttaa 9111447  T
Q  234 agctagataagtctaatgatctctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaat 329  Q
    || |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||    
T  9111446 agatagataagtctaatgatct--ctcttttgcttattgattttaatgtttatatgtttatacttattgttattttgagataattcacatgtcaat 9111353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 12141748 - 12141649
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | ||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12141748 atgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 12141649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 24981258 - 24981133
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  24981258 atgattcataacggggaagaactgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggtta 24981159  T
Q  143 gataacagtttactattttgcaggtt 168  Q
     |||| ||| |  | |||||||||||    
T  24981158 cataatagtattttgttttgcaggtt 24981133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 4242665 - 4242540
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | ||||||||| |||||||| |||||||||||||| | ||||| |||||||||||||||||||||  || ||||||||| |||| ||||    
T  4242665 atgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggacaacgattatgtcacgtctcaggtta 4242566  T
Q  143 gataacagtttactattttgcaggtt 168  Q
      ||||||| | || |||||||||||    
T  4242565 cttaacagtgtgctgttttgcaggtt 4242540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 43254127 - 43254235
Alignment:
Q  34 acctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacg 132  Q
    |||||| | |||||||||||  ||||||||| ||||||||| |||||||||||||| |||||||||| ||||| |||| ||||||||||||| |||||||    
T  43254127 acctctgatatgattcatatatgggaagaacatgttgtatcctgggaggatatgcgcttatgaggcgaataaa-tccttaaggacagtgactttgtcacg 43254225  T
Q  133 cctcatgtta 142  Q
    ||||||||||    
T  43254226 cctcatgtta 43254235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 38825574 - 38825479
Alignment:
Q  43 atgattcatatcagggaagaact-gttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||| |||||    
T  38825574 atgattcatagcagagaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaaggacagtgacttcgtcacacctca 38825479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 49387699 - 49387575
Alignment:
Q  46 attcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttaga 144  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||||||||||| |    
T  49387699 attcacatcagggaagaacatgttgtatcctgggaggatatgcgcttataaggcgaataaa-tccttaaggccagtgactttgtcacgcctcatgttata 49387601  T
Q  145 taacagtttactattttgcaggttat 170  Q
    |||  | ||||| ||| |||||||||    
T  49387600 taatggattactgtttggcaggttat 49387575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 1953709 - 1953780
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaag 114  Q
    |||||||||| |||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  1953709 atgattcataacagggaagaactgttgtatcctgggaggatattcgcttatgaggcagataaaatcctcaag 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 47580416 - 47580512
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgg--gaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | ||||||| |||||||||| |||  |||||||| || ||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  47580416 atgattcataacggggaagacctgttgtatcctggtggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgcctca 47580512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 38828784 - 38828662
Alignment:
Q  43 atgattcatatcagggaagaact-gttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    ||||||||||  ||||||||||| ||| |||| ||||| |||||| | |||| |||||||||||||||| ||||| |||||||  ||||||||||| |||    
T  38828784 atgattcatagtagggaagaacttgttttatcctgggaagatatgagcttataaggcggataaaatccttaaggatagtgacttcgtcacgcctcaagtt 38828685  T
Q  142 agataacagtttactattttgca 164  Q
    |  |||| | |||||||||||||    
T  38828684 atgtaacggcttactattttgca 38828662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 21501346 - 21501220
Alignment:
Q  43 atgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    |||||| |||| || ||||||| ||||||||| | ||||||||| |  ||||||| |||||||| |||| || || || |||| ||||||||||||| ||    
T  21501346 atgatttatattagagaagaacatgttgtatcctaggaggatatacacttatgagacggataaa-tccttaaagatagcgactttgtcacgcctcatatt 21501248  T
Q  142 agataacagtttactattttgcaggtta 169  Q
    | |||||  |||| ||||||||||||||    
T  21501247 atataactatttattattttgcaggtta 21501220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 51465563 - 51465600
Alignment:
Q  100 gataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||  |||||||||||||||||||||||||||    
T  51465563 gataaaatctccaaggacagtgactatgtcacgcctca 51465600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 264
Target Start/End: Original strand, 895449 - 895685
Alignment:
Q  28 tctataacctctaacatgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatg 127  Q
    ||||| |||||| | ||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  895449 tctatcacctctgatatgattcatattagggaagaacttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatg 895548  T
Q  128 tcacgcctcatgttagataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcattaccagcctcaaatcaccgcaa 227  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  895549 tcacgactcaggttagataacagtttactattttgcaggttattgctattcatggtttggtgtttgtttgttcttcattaccagcctcaaatcaccgcaa 895648  T
Q  228 ttttaaagctagataagtctaatgatctctctctttt 264  Q
    |||||||| ||||||||||||||||||||||||||||    
T  895649 ttttaaagatagataagtctaatgatctctctctttt 895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 6667815 - 6667721
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6667815 atgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgcctca 6667721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 13010614 - 13010525
Alignment:
Q  58 gaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 147  Q
    ||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  13010614 gaagaactgttatatcctaggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttatataa 13010525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 44643474 - 44643572
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||| ||||    
T  44643474 atgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaat-ctgaaggacagtgactatgtcacgcctcaggtta 44643572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 31767543 - 31767429
Alignment:
Q  44 tgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||||||||||||||||||| ||||||||| | |||||||||| | |||||||||||||||| |||| ||||| ||||| | |||||||||||||||||    
T  31767543 tgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcggataaa-tccttaaggatagtgattttgtcacgcctcatgtta 31767445  T
Q  143 gataacagtttactat 158  Q
    | |||| |||||||||    
T  31767444 gttaacggtttactat 31767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 20058177 - 20058091
Alignment:
Q  65 tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagt 151  Q
    ||||||||| ||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  20058177 tgttgtatcgtggaaggatacgcgctaatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataacagt 20058091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 6671481 - 6671393
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||      ||||||||||||||||||||||| |||||||||||||||||||    
T  6671481 atgattcataacggggaagaactgttgtatcctgggaggatatgcg------aggcggataaaatcctcaaggacggtgactatgtcacgcctca 6671393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 13250621 - 13250497
Alignment:
Q  44 tgattcatatcagggaagaac-tgttgtat-cttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    ||||||||||||||||||||| | |||||| ||  | |||||||||| |||||||| |||| ||||| | ||||| ||||||| ||||||||||||||||    
T  13250621 tgattcatatcagggaagaacatattgtatcctaagaaggatatgcgcttatgaggtggat-aaatctttaaggagagtgactttgtcacgcctcatgtt 13250523  T
Q  142 agataacagtttactattttgcaggt 167  Q
    | ||||| | ||||||||||||||||    
T  13250522 atataacggcttactattttgcaggt 13250497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 43287870 - 43287991
Alignment:
Q  44 tgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||||||||| | ||||||  ||||||||| ||| | |||||||| |||||||||| |||||  | | ||||||||||||| |||||||||||||||||    
T  43287870 tgattcatatctgagaagaatatgttgtatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgactttgtcacgcctcatgtta 43287969  T
Q  143 gataacagtttactattttgca 164  Q
       ||| |||||||||| ||||    
T  43287970 ttcaacggtttactattgtgca 43287991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 11914167 - 11914035
Alignment:
Q  34 acctctaacatgattcatatcagggaagaa-ctgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacg 132  Q
    |||||||  |||||||||| | | |||||| ||||||||| ||||||||||||||  ||||||| ||||| ||||||| ||||| | |||||  ||||||    
T  11914167 acctctagtatgattcataccggagaagaatctgttgtat-ttgggaggatatgcacttatgagacggat-aaatccttaaggataatgacttcgtcacg 11914070  T
Q  133 cctcatgttagataacagtttactattttgcaggt 167  Q
    ||| | ||||  |||| ||| ||||||||| ||||    
T  11914069 ccttaggttatttaacggttgactattttgtaggt 11914035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 122 - 356
Target Start/End: Complemental strand, 16366445 - 16366212
Alignment:
Q  122 actatgtcacgcctcatgttagataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcattaccagcctcaaatca 221  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  16366445 actatgtcacgcctcaggttagataacagtttactattttgcaggttattgctattcatggtttgatgtttgtttgctcttcattaccagcctcaaatca 16366346  T
Q  222 ccgcaattttaaagctagataagtctaatgatctctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcac 321  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  16366345 ccgcaattttaaagatagataagtctaatgatctctct-ttttgcttattgattctaatgcttatatgtttatgctgattgttattttgagataattcac 16366247  T
Q  322 atgtcaataagttaacaacaatcttgaggatttta 356  Q
    |||||||||| |  |||||||||||||||||||||    
T  16366246 atgtcaataaatatacaacaatcttgaggatttta 16366212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 19930152 - 19930008
Alignment:
Q  22 agttgatctataacctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagt 120  Q
    ||||| ||||| |||||| |  |||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||| |||||| ||    
T  19930152 agttgttctatcacctctgatgtgattcatctcagggaagaacatgttgtatct-gggaggatatgcgcttatgaggcggataaa-tccttaaggacggt 19930055  T
Q  121 gactatgtcacgcctcatgttagataacagtttactattttgcaggt 167  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  19930054 gactttgtcacgcctcatgttatataacggtttactattttgcaggt 19930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 26445190 - 26445064
Alignment:
Q  43 atgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| || |||||||||||||||| |||| ||||||||||||| ||||| ||||||||||    
T  26445190 atgattcatatcagggaagaacatgttgtatcttgacaggatatacgattatgaggcggataaa-tccttaaggacagtgactttgtcatgcctcatgtt 26445092  T
Q  142 agataacagtttactattttgcaggtta 169  Q
    | ||| | ||||| ||||||||||||||    
T  26445091 atatatccgtttattattttgcaggtta 26445064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 42253635 - 42253534
Alignment:
Q  65 tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagtttactattttgca 164  Q
    ||||||||| | |||||||||||| ||||||||||| |||| |||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  42253635 tgttgtatccttggaggatatgcgcttatgaggcgggtaaa-tccttaaggacagtgactttgtcacgcctcatgttatataacggtttactattttgca 42253537  T
Q  165 ggt 167  Q
    |||    
T  42253536 ggt 42253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 2353208 - 2353343
Alignment:
Q  34 acctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacg 132  Q
    |||||| | |||||||||||||| ||||||| ||||||||| |||||||||| ||  ||||||||||||| ||||||| ||||||| |||||   ||| |    
T  2353208 acctcttatatgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcggat-aaatccttaaggacaatgacttcatcatg 2353306  T
Q  133 cctcatgttagataacagtttactattttgcaggtta 169  Q
    ||||| |||| ||||| ||||| ||||||||||||||    
T  2353307 cctcaggttatataacggtttattattttgcaggtta 2353343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 9372317 - 9372192
Alignment:
Q  34 acctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacg 132  Q
    |||||| | ||||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||||| ||||| |||| |||||||||||||  |||| |    
T  9372317 acctctcatatgattcatatcagggatgaacctgttgtatcctgggacgatatgcgcttatgaggcgaataaa-tccttaaggacagtgacttcgtcatg 9372219  T
Q  133 cctcatgttagataacagtttactatt 159  Q
    ||||| ||||  |||| ||||||||||    
T  9372218 cctcaggttatttaacggtttactatt 9372192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 11634267 - 11634190
Alignment:
Q  43 atgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacag 119  Q
    |||||||||| | |||||| || ||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||    
T  11634267 atgattcataacggggaaggacatgttgtatcctgggaggatatgcgtttacgaggtggataaaatcctcaagaacag 11634190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 19935297 - 19935212
Alignment:
Q  76 gggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagtttactattttgca 164  Q
    ||||| ||||||| |||||||| ||||||| |||| ||||||||||||| ||||||||||||| ||  ||||| |||||||||||||||    
T  19935297 gggagaatatgcgcttatgaggaggataaa-tccttaaggacagtgactttgtcacgcctcatatt--ataacggtttactattttgca 19935212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 42256915 - 42256790
Alignment:
Q  44 tgattcatatcagggaagaa-ctgttgtatcttgggag----gatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcat 138  Q
    ||||||||||||||||||||  ||||||||| ||||||     ||||||| |||||| | |||| ||||||| || |||||||| | |||||||||||||    
T  42256915 tgattcatatcagggaagaatatgttgtatcctgggagtatatatatgcgcttatgaagaggat-aaatccttaaagacagtgattttgtcacgcctcat 42256817  T
Q  139 gttagataacagtttactattttgcag 165  Q
    |||| |||||  ||||||| |||||||    
T  42256816 gttatataacgatttactagtttgcag 42256790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 43 - 359
Target Start/End: Complemental strand, 21185417 - 21185101
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | |||||||||| || |||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  21185417 atgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcaggtta 21185318  T
Q  143 gataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgc-tcttcattaccagcctcaaatcaccgcaattttaaagctagat 241  Q
       ||| |||||| || |||||||| ||  |  |||| |  ||  ||||||||| | ||  |||||   || |||| ||||| ||||||||||| |||||    
T  21185317 ttgaacggtttaccatgttgcaggtcatctccgttcatgacttcttgtttgtttacttcaccattaatggcttcaagtcaccacaattttaaagatagat 21185218  T
Q  242 aagtctaatgatctctctcttttgcttattgatt-ttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaataagttaacaac 340  Q
    |||||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||| |||||| |||| |||||| |||  | ||  || |||||    
T  21185217 aagtctaatgatctctctattttgcttattgtttattaatgcttatatgtttatgctgattattatttagagagaattcatatg--actacttttacaac 21185120  T
Q  341 aatcttgaggattttatta 359  Q
    |||||||||||||||||||    
T  21185119 aatcttgaggattttatta 21185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 1788995 - 1788901
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1788995 atgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 1788901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 39655795 - 39655687
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | | |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39655795 atgattcataacggagaagaactgttgtatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 39655696  T
Q  143 gataacagt 151  Q
      |||||||    
T  39655695 cttaacagt 39655687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 17028376 - 17028501
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | ||||||||||||  |||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  17028376 atgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtta 17028475  T
Q  143 gataacagtttactattttgcaggtt 168  Q
     |||| ||| |  | |||||||||||    
T  17028476 cataatagtattttgttttgcaggtt 17028501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 17558812 - 17558937
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | ||||||||||||  |||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  17558812 atgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtta 17558911  T
Q  143 gataacagtttactattttgcaggtt 168  Q
     |||| ||| |  | |||||||||||    
T  17558912 cataatagtattttgttttgcaggtt 17558937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 17088806 - 17088743
Alignment:
Q  103 aaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagtttactattttgcagg 166  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||||| | |||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcaggttagataattgtttattgttttgcagg 17088743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 38678725 - 38678809
Alignment:
Q  62 aactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 147  Q
    |||||||||||| ||  |||||||||| ||||||| ||||| |||||||||| |||| |||||||||||||||||| |||| ||||    
T  38678725 aactgttgtatcctgtaaggatatgcgcttatgagacggatcaaatcctcaaagaca-tgactatgtcacgcctcaggttatataa 38678809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 38676893 - 38676939
Alignment:
Q  101 ataaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 147  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcaggttatataa 38676939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 21347149 - 21347198
Alignment:
Q  59 aagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatc 108  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  21347149 aagaacagttgtatcttgggaggatatgtgcttatgaggcggataaaatc 21347198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 31183756 - 31183821
Alignment:
Q  77 ggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||||| | |||||| ||||||||| |||||  ||||||| |||||||||||||||||||    
T  31183756 ggaggatatgcgctaatgaggtggataaaatactcaataacagtgattatgtcacgcctcatgtta 31183821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 21184499 - 21184455
Alignment:
Q  276 ttaatggttatatgtttatgctgatttttattttgagataattca 320  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||    
T  21184499 ttaatgcttatatgtttatgctgattattatttagagataattca 21184455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 38676329 - 38676373
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgc 87  Q
    |||||||||| | |||||||| ||||||||| |||||||||||||    
T  38676329 atgattcataacggggaagaattgttgtatcctgggaggatatgc 38676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 6856 - 6730
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||||||||||| |||||||||||| ||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  6856 atgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagtgactatgtcacgcctcagttta 6757  T
Q  143 gataacagtttactattttgcaggtta 169  Q
    |||||  ||||| | ||||||||||||    
T  6756 gataatggtttattgttttgcaggtta 6730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 13291951 - 13292160
Alignment:
Q  20 cgagttgatctataacctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggaca 118  Q
    ||||||| ||||| |||||| | |||||||||||||| ||| ||| ||||||||| |||||||||||||| |||||||||||||||| || | |||||||    
T  13291951 cgagttgttctatcacctctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggataaa-tctttaaggaca 13292049  T
Q  119 gtgactatgtcacgcctcatgttagataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtttgctcttcattaccagcctcaaa 218  Q
    || |||  |||| |||||| || ||||| || |||||||||||| |||| || ||  |||| |||||  || |||||||||||||||||||  |||||||    
T  13292050 gtaacttcgtcatgcctcaggtcagatagcaatttactattttgtaggtcatcgccgttcacggtttcatggttgtttgctcttcattaccgacctcaaa 13292149  T
Q  219 tcaccgcaatt 229  Q
    |||||||||||    
T  13292150 tcaccgcaatt 13292160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 26703113 - 26703005
Alignment:
Q  44 tgattcatatcagggaagaact-gttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  26703113 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggtta 26703014  T
Q  143 gataacagt 151  Q
     ||||||||    
T  26703013 cataacagt 26703005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 26972846 - 26972738
Alignment:
Q  44 tgattcatatcagggaagaact-gttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  26972846 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggtta 26972747  T
Q  143 gataacagt 151  Q
     ||||||||    
T  26972746 cataacagt 26972738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 39292119 - 39292246
Alignment:
Q  42 catgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    ||||||||||| | | |||||||||||||||  ||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||| |||    
T  39292119 catgattcataacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcacacctcaggtt 39292218  T
Q  142 agataacagtttactattttgcaggtta 169  Q
    ||||||  ||||| | ||||||||||||    
T  39292219 agataatggtttattgttttgcaggtta 39292246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 18594836 - 18594962
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | |||||||||||||||||| || ||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  18594836 atgattcataacggggaagaactgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagtgacaatgtcacgcctcaggtta 18594935  T
Q  143 gataacagtttactattttgcaggtta 169  Q
     |||| ||| |  | ||||||||||||    
T  18594936 cataatagtattttgttttgcaggtta 18594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 19697941 - 19697847
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19697941 atgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatgtcacgcctca 19697847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 6591930 - 6591846
Alignment:
Q  58 gaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  6591930 gaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcaggtta 6591846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 24045017 - 24044902
Alignment:
Q  55 agggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagttt 153  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||| ||||| |||| ||||||||||||| ||||||||||||||||| ||||  | ||    
T  24045017 agggaagaacatgttgtatcctgggaggatatgcgcttatgaggcgaataaa-tccttaaggacagtgactttgtcacgcctcatgttatataatggatt 24044919  T
Q  154 actattttgcaggttat 170  Q
    ||| ||| |||||||||    
T  24044918 actgtttggcaggttat 24044902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 2936243 - 2936127
Alignment:
Q  44 tgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||| ||||||| ||||||| ||| ||||||||  | |||||||| |||||||||||||||| |||| |||||||||||||  ||||| ||||||||||    
T  2936243 tgatttatatcagagaagaacatgtggtatcttgaaaagatatgcgcttatgaggcggataaa-tccttaaggacagtgacttcgtcacacctcatgtta 2936145  T
Q  143 gataacagtttactattt 160  Q
     ||||| |||||||||||    
T  2936144 tataacggtttactattt 2936127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 24041717 - 24041599
Alignment:
Q  52 atcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacag 150  Q
    ||||||||||||| ||||||||| | |||||||||||| |||||||||| || |||| || || |||||||||| |||||||||| |||||| ||||  |    
T  24041717 atcagggaagaacatgttgtatcctaggaggatatgcgcttatgaggcgaat-aaattcttaaagacagtgactttgtcacgccttatgttatataatgg 24041619  T
Q  151 tttactattttgcaggttat 170  Q
     ||||| ||| |||||||||    
T  24041618 attactgtttggcaggttat 24041599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 15518074 - 15518127
Alignment:
Q  79 aggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacg 132  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacg 15518127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 14579631 - 14579716
Alignment:
Q  34 acctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacag 119  Q
    |||||| ||||||||||| |||| ||||||| ||||||||| || |||||||| || ||||||||||||| ||||||| ||||||||    
T  14579631 acctcttacatgattcatgtcagagaagaacctgttgtatcctgagaggatattcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 19973730 - 19973788
Alignment:
Q  83 tatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||| |||||||||||||||| || | ||||||||||||| |||||||||||| ||||    
T  19973730 tatgcgcttatgaggcggataaa-tctttaaggacagtgactttgtcacgcctcaggtta 19973788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 82643 - 82737
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||| ||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  82643 atgatttataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctca 82737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 22301224 - 22301122
Alignment:
Q  66 gttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagtttactattttgcag 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |  | ||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcag 22301125  T
Q  166 gtt 168  Q
    |||    
T  22301124 gtt 22301122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 39426547 - 39426453
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  39426547 atgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggataaaatcctcaaggacagtgactatatcacgcctca 39426453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 11674023 - 11674116
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  11674023 atgattcataac-gggaacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacacctca 11674116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 31210171 - 31210077
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 137  Q
    |||||||||| | |||||||||||||||| |  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31210171 atgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 31210077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 31206722 - 31206623
Alignment:
Q  43 atgattcatatcagggaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    |||||||||| | |||||||||||||||||| ||  |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  31206722 atgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagtgactatgtcacgcctcaggtta 31206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 3850636 - 3850527
Alignment:
Q  43 atgattcatatcagggaagaact-gttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    |||||||||| |  ||||||||| |||||||| | |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||  ||    
T  3850636 atgattcataccgaggaagaactcgttgtatcataggaggatatgcgcttatgaggcgtataaaatcatcaaggacagtgactatgtcacgcctcagatt 3850537  T
Q  142 agataacagt 151  Q
    | ||||||||    
T  3850536 acataacagt 3850527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 13815760 - 13815886
Alignment:
Q  44 tgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||||| || |||||||||| ||||||||| ||||| |||||||| |||||||||| ||||| |||| ||||||||||||| |||||||||||||||||    
T  13815760 tgattcacattagggaagaacatgttgtatcctgggaagatatgcgcttatgaggcgaataaa-tccttaaggacagtgactttgtcacgcctcatgtta 13815858  T
Q  143 gataacagtttactattttgcaggttat 170  Q
     ||||  | ||||| ||| |||||||||    
T  13815859 tataatggattactgtttggcaggttat 13815886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 15569564 - 15569686
Alignment:
Q  20 cgagttgatctataacctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggaca 118  Q
    ||||||| ||| | |||||| | |||||||||||||| ||||||| ||||||||| |||||||||||| | ||||||||||||| ||||||  |||||||    
T  15569564 cgagttgttctgtcacctctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggaca 15569662  T
Q  119 gtgactatgtcacgcctcatgtta 142  Q
    |||||| |||||||||||| ||||    
T  15569663 gtgactttgtcacgcctcaggtta 15569686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 2609698 - 2609574
Alignment:
Q  43 atgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtt 141  Q
    |||||||||||||| ||||||| ||||||||| || ||||||||||| ||||||| | |||||| | || ||||| |||||||  ||||||||||| |||    
T  2609698 atgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgagacagataaa-tacttaaggatagtgacttcgtcacgcctcaggtt 2609600  T
Q  142 agataacagtttactattttgcaggt 167  Q
    | ||||  | ||||||||||||||||    
T  2609599 atataaaggcttactattttgcaggt 2609574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 32352524 - 32352401
Alignment:
Q  44 tgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgtta 142  Q
    ||||||||||| | ||||||  |||||| || |||||||||||||| |||||||||| ||||| |||| ||||||||||||| ||||||||||| |||||    
T  32352524 tgattcatatctgagaagaatatgttgtgtcctgggaggatatgcgcttatgaggcgaataaa-tccttaaggacagtgactttgtcacgcctcgtgtta 32352426  T
Q  143 gataacagtttactattttgcaggt 167  Q
       ||| |||||||| | |||||||    
T  32352425 ttcaacggtttactagtgtgcaggt 32352401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 15169949 - 15170107
Alignment:
Q  36 ctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcc 134  Q
    |||| ||||||||||| | || ||||||| ||||||||| || ||||||||||||||||||||| |||||| |  | |||||||||||||   ||||| |    
T  15169949 ctctgacatgattcatgttagagaagaacctgttgtatcctgtgaggatatgcgtttatgaggctgataaattttt-aaggacagtgacttcatcacgtc 15170047  T
Q  135 tcatgttagataacagtttactattttgcaggttattgctattcaaggtttggtgtttgtt 195  Q
    ||| ||||  |||  ||||||| ||||||||||||||||  || | ||||| |||||||||    
T  15170048 tcaggttatttaat-gtttactgttttgcaggttattgcattttatggtttcgtgtttgtt 15170107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 5021 - 4942
Alignment:
Q  43 atgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtga 122  Q
    |||||||||||||  ||||||| |||||||||||||||||||||| | ||||||||| ||| ||||||| ||| |||||||    
T  5021 atgattcatatcatagaagaacctgttgtatcttgggaggatatgtgcttatgaggcagat-aaatccttaagaacagtga 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 12112 - 12194
Alignment:
Q  21 gagttgatctataacctctaacatgattcatatcagggaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggat 102  Q
    |||||| ||| | |||||| | ||||||||||| |||||||||| ||||||||| | ||| |||||||| || ||||||||||    
T  12112 gagttgttctgtcacctctgatatgattcatataagggaagaacttgttgtatcctaggatgatatgcgcttgtgaggcggat 12194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 804 - 892
Alignment:
Q  81 gatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcatgttagataacagtttactattttgcaggttat 170  Q
    |||||||  |||||||||||| |||  ||| ||||||||||||| ||||||||||||||||  || |||| |||||  || |||||||||    
T  804 gatatgctcttatgaggcggaaaaatacct-aaggacagtgactttgtcacgcctcatgttgtatgacagattactgcttagcaggttat 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University