View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_low_1 (Length: 1141)

Name: NF15642_low_1
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_low_1
NF15642_low_1
[»] chr1 (7 HSPs)
chr1 (241-674)||(52140290-52140714)
chr1 (671-808)||(52140746-52140883)
chr1 (395-626)||(52130840-52131077)
chr1 (88-259)||(52130508-52130680)
chr1 (910-971)||(6923510-6923571)
chr1 (814-857)||(52140901-52140944)
chr1 (105-144)||(52154275-52154314)
[»] chr8 (4 HSPs)
chr8 (286-674)||(17525002-17525380)
chr8 (683-785)||(17524854-17524955)
chr8 (789-913)||(17524437-17524571)
chr8 (911-948)||(16367881-16367918)
[»] chr4 (1 HSPs)
chr4 (927-1135)||(37615638-37615847)
[»] chr6 (1 HSPs)
chr6 (988-1074)||(22083651-22083733)
[»] chr3 (1 HSPs)
chr3 (908-949)||(52130754-52130795)
[»] chr7 (1 HSPs)
chr7 (913-949)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 241 - 674
Target Start/End: Original strand, 52140290 - 52140714
Alignment:
Q  241 acatcttgatctttcatagcaacacgacatgtttggtcacggttcataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggac 340  Q
    |||| ||||||||||||||||||| ||| ||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  52140290 acattttgatctttcatagcaacatgacgtgtttcgtcccggttcataggttgcgagcattgatcacacgatgtaataccataagtgcatccatttggac 52140389  T
Q  341 acatgtaaagcgaggttcctagattgtgatcatcatttggaatcgttggatcaaagagaacataattctggttgaggttttggagagtagtactagtatg 440  Q
    ||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  52140390 acatgtaaaccgagattcctagactgtgatcatcatttggaattgttggatcaaagagaacataattctggttgagattttggacagtagtactagtatg 52140489  T
Q  441 atatagatttcctaagctgccaaacaaatgcttgtcgttgtttctcatgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtct 540  Q
    ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  52140490 atatagatttcctaagctgccaaacaaatgcatgtcattgttgctcatgagccttacaacagtaccaaaagacaagcgaaacatgtttaagagagagttt 52140589  T
Q  541 atggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaacagaagcttaagggtcactttggttgaagaagatgaagaagaagcca 640  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||         ||||||||||||||    
T  52140590 atggcagctttggatgcttcagcgaatagaactttgttttgctttttgtcaaccagaagcttaagggttactttggt---------tgaagaagaagcca 52140680  T
Q  641 tattgaaagataatgcattaacagagaggctagt 674  Q
    ||||||||||||||||||||||||||||||||||    
T  52140681 tattgaaagataatgcattaacagagaggctagt 52140714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 671 - 808
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
Q  671 tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 770  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140746 tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 52140845  T
Q  771 aatttaattcgatgtatttatgtacaaacagttgccac 808  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52140846 aatttaattcgatgtatttatgtacaaacagttgccac 52140883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 395 - 626
Target Start/End: Original strand, 52130840 - 52131077
Alignment:
Q  395 agagaacataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgt---cgttgtttctc---at 488  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||| |||||||| ||   ||||||| |||   |||| || ||    ||    
T  52130840 agagaacataattctggttgaggttttggagagtactactagtgtgatgcagattgcctaagctacccgccaaatgcatgttaacgttattgctacttat 52130939  T
Q  489 gagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttg 588  Q
    |||||||| ||| || |||||||||||  |||||||||||||||||||||||| ||| ||||| |||||||| || || |||||||||||||||||| ||    
T  52130940 gagccttaaaactgtgccaaaagacaagtgaaacatgtttaagagagagtctacggcagcttttgatgcttctgcaaacagaactttgttttgctttgtg 52131039  T
Q  589 tcaaacagaagcttaagggtcactttggttgaagaaga 626  Q
    |||| | ||||||||||||||| |||||| ||||||||    
T  52131040 tcaaccggaagcttaagggtcattttggtggaagaaga 52131077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 52130508 - 52130680
Alignment:
Q  88 attaggacaaattaatc-tacctcatccatcccaaattcaaccaccatttcttgcaagttatggacttgtttgaaatcgaacttgttaagtaacgtaaca 186  Q
    ||||||||||||||||| |||||||| ||| ||||| |||||||| ||||||||  ||  |   |||||||||| || ||||||||| | |||||||| |    
T  52130508 attaggacaaattaatcgtacctcattcataccaaactcaaccacaatttcttgagaggcaccaacttgtttgatattgaacttgttgattaacgtaata 52130607  T
Q  187 attgaaattggtgagaagggatgaataaccaaatcatccatcaacatgaaagttacatcttgatctttcatag 259  Q
    | |||||||| | ||| ||| ||||| || ||||||||||||||||||||| |||||| ||||||||||||||    
T  52130608 actgaaattgctaagatgggctgaatcactaaatcatccatcaacatgaaaattacattttgatctttcatag 52130680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 910 - 971
Target Start/End: Complemental strand, 6923571 - 6923510
Alignment:
Q  910 taaactagattgtctacccgtgctgccgcatgggtcataatttgctaaaaatattagttgaa 971  Q
    |||||||||| |||||||||||| || ||| ||||||||  | |||||||||||||||||||    
T  6923571 taaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaa 6923510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 814 - 857
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
Q  814 agcttgattttgagttctcttatcctcctctgcaattggccaac 857  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  52140901 agcttaattttgagttctcttaatctcctctgcaattggccaac 52140944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 52154275 - 52154314
Alignment:
Q  105 tacctcatccatcccaaattcaaccaccatttcttgcaag 144  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  52154275 tacctcatccagccccaattcaaccaccatttcttgcaag 52154314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 286 - 674
Target Start/End: Complemental strand, 17525380 - 17525002
Alignment:
Q  286 ataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggacacatgtaaagcgaggttcctagattgtgatcatcatttggaatcg 385  Q
    |||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |    
T  17525380 ataggttgcgagcattgatc-cacgatgtaataccttaagtgcatccatttggacacatgtaaaacgaggttcctaggctgtgatcatcatttggaattg 17525282  T
Q  386 ttggatcaaagagaacataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgtcgttgtttct 485  Q
    ||||||| |||||||| ||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||  ||    
T  17525281 ttggatcgaagagaacgtaattttggttgagattttggacagtagtactagtatgatacagatttcctaagctgccaaacaaatgcatgtcgttgtagct 17525182  T
Q  486 catgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgcttt 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||| || || | ||||||||||||||||    
T  17525181 catgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcagcttgtgatgattcggcaaacataactttgttttgcttt 17525082  T
Q  586 ttgtcaaacagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt 674  Q
     |||||| ||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  17525081 gtgtcaaccagaagcctaagggtcactttggttgaag---------aagaagccatattgaaagataatgcattaacagagaggctagt 17525002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 683 - 785
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
Q  683 tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga 782  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  17524955 tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga 17524857  T
Q  783 tgt 785  Q
    |||    
T  17524856 tgt 17524854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 789 - 913
Target Start/End: Complemental strand, 17524571 - 17524437
Alignment:
Q  789 tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa-catttgagcaagagaaacttgg 878  Q
    |||||||||||||||||||||||||||         ||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||    
T  17524571 tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaaacattggagcaagagaaacttgg 17524472  T
Q  879 tagaataccgcgatggttcacacaaatttgttaaa 913  Q
    |||| |||||||||| ||||||||||||| |||||    
T  17524471 tagagtaccgcgatgtttcacacaaatttcttaaa 17524437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 948
Target Start/End: Complemental strand, 16367918 - 16367881
Alignment:
Q  911 aaactagattgtctacccgtgctgccgcatgggtcata 948  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcata 16367881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 927 - 1135
Target Start/End: Original strand, 37615638 - 37615847
Alignment:
Q  927 ccgtgctgccgcatgggtcataatttgctaaaaatattagttgaaagcaatc---atatatccgataaaattaatatatagttactcaatgtaccaaatt 1023  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||    |||||||| |||||||||||||||||||||||||| |||  ||||    
T  37615638 ccgtgctgctgcacgggtcataatttactaaaactattagttgaaagccattgttatatatccaataaaattaatatatagttactcaatatactgaatt 37615737  T
Q  1024 gttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattat--agatatgatagacatacataaccataattgtccggc 1121  Q
    ||||||||  |||||||||||||    |||||| |||| ||||||||||||||||||| |    |||||||| ||||||||||| |||||||||| ||||    
T  37615738 gttctgacgtaatgcgattaatt----gacgtacgatcgtcttacataggttaaaaaaattcgaagatatgagagacatacatagccataattgttcggc 37615833  T
Q  1122 ctatgcttctccac 1135  Q
    ||||| | ||||||    
T  37615834 ctatgttactccac 37615847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 988 - 1074
Target Start/End: Complemental strand, 22083733 - 22083651
Alignment:
Q  988 ataaaattaatatatagttactcaatgtaccaaattgttctgactaaatgcgattaattaattgacgtatgatcatcttacataggt 1074  Q
    |||||||||| |||||||||||||||||||  ||||||||||||  |||||||||    |||| |||||||||| ||||||||||||    
T  22083733 ataaaattaagatatagttactcaatgtactgaattgttctgacgtaatgcgatt----aattcacgtatgatcgtcttacataggt 22083651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 908 - 949
Target Start/End: Complemental strand, 52130795 - 52130754
Alignment:
Q  908 gttaaactagattgtctacccgtgctgccgcatgggtcataa 949  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  52130795 gttagactagattgtctacccgtgctgccgcacgggtcataa 52130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 913 - 949
Target Start/End: Complemental strand, 24763355 - 24763319
Alignment:
Q  913 actagattgtctacccgtgctgccgcatgggtcataa 949  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24763355 actagattgtctacccgtgctgccgcacgggtcataa 24763319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University