View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_low_12 (Length: 535)

Name: NF15642_low_12
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_low_12
NF15642_low_12
[»] chr7 (19 HSPs)
chr7 (15-518)||(39621756-39622259)
chr7 (15-236)||(39537984-39538205)
chr7 (15-236)||(39547442-39547663)
chr7 (15-231)||(39564226-39564442)
chr7 (15-236)||(39338658-39338879)
chr7 (19-231)||(39353505-39353717)
chr7 (15-231)||(39366011-39366227)
chr7 (32-248)||(39589258-39589474)
chr7 (49-231)||(1084783-1084967)
chr7 (17-251)||(39575017-39575251)
chr7 (313-505)||(39588902-39589097)
chr7 (417-505)||(39339044-39339132)
chr7 (388-505)||(39563820-39563937)
chr7 (417-505)||(39353887-39353975)
chr7 (388-502)||(39366438-39366552)
chr7 (417-506)||(39547188-39547277)
chr7 (417-505)||(39537724-39537812)
chr7 (423-504)||(1084527-1084608)
chr7 (456-506)||(39574433-39574483)
[»] chr8 (1 HSPs)
chr8 (421-506)||(4501668-4501753)
[»] chr2 (2 HSPs)
chr2 (388-490)||(44210679-44210781)
chr2 (456-506)||(43457033-43457083)
[»] chr1 (2 HSPs)
chr1 (320-358)||(2148656-2148694)
chr1 (320-358)||(2160484-2160522)


Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Complemental strand, 39622259 - 39621756
Alignment:
Q  15 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622259 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 39622160  T
Q  115 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622159 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 39622060  T
Q  215 ctgaaaccaggaaggttggtatctgaatcccatgttgaataatttcaatatatagcttacaccctatttattatcacacgttaacaaaattggagctaac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622059 ctgaaaccaggaaggttggtatctgaatcccatgttgaataatttcaatatatagcttacaccctatttattatcacacgttaacaaaattggagctaac 39621960  T
Q  315 taatggatgcagatgttcatcgaggaagttatggagcttgtagaactgaccccgctgagggatacaattgttgtgcctggtgctactggtctctctacac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39621959 taatggatgcagatgttcatcgaggaagttatggagcttgtagaactgaccccactgagggatacaattgttgtgcctggtgctactggtctctctacac 39621860  T
Q  415 tacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaagatctgtcgc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621859 tacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaagatctgtcgc 39621760  T
Q  515 tatt 518  Q
    ||||    
T  39621759 tatt 39621756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 39538205 - 39537984
Alignment:
Q  15 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 114  Q
    |||||||||||| ||  |||| ||||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| ||    
T  39538205 tctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatt 39538106  T
Q  115 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 214  Q
    |  ||||||||||| |||| | ||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| |||||| |||| |||||||    
T  39538105 tcaggatactgtgagcaaactgatatccattctccttatgttactgtctatgaatctttgctctattcagcatggctccggttgtctccagacatcaatg 39538006  T
Q  215 ctgaaaccaggaaggttggtat 236  Q
    ||||||||||||||||| ||||    
T  39538005 ctgaaaccaggaaggttagtat 39537984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 39547663 - 39547442
Alignment:
Q  15 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 114  Q
    |||||||||||||||  |||| ||||||||  | |||||||||||||||| ||||||||| ||||||||| |||||||||| || |||||||||||| ||    
T  39547663 tctgatggatgtactttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatt 39547564  T
Q  115 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 214  Q
    |  ||||||||||| |||| | |||||||||||||| |||||||||| |||||||| ||||||| ||| |||||||||||||||||  | || |||||||    
T  39547563 tcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctccgattgtcccctgacatcaatg 39547464  T
Q  215 ctgaaaccaggaaggttggtat 236  Q
    |||||||||| |||||| ||||    
T  39547463 ctgaaaccagaaaggttagtat 39547442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 39564442 - 39564226
Alignment:
Q  15 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 114  Q
    |||||||||||| ||  |||| || |||||| |||||||||||||||||| |||||||||||| |||| | |||||||||| ||||||||||||||| ||    
T  39564442 tctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatt 39564343  T
Q  115 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 214  Q
    | ||| |||||||| |||||| ||||||| ||||||||||||||||| |||||||| ||||||| ||| ||||||||||| |||||  |||| |||||||    
T  39564342 tctgggtactgtgagcaaaatgatatccactctccttatgttactgtctatgaatctttgctctattcagcatggctccggttgtccccagacatcaatg 39564243  T
Q  215 ctgaaaccaggaaggtt 231  Q
    ||||||| || ||||||    
T  39564242 ctgaaactagaaaggtt 39564226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 39338658 - 39338879
Alignment:
Q  15 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 114  Q
    |||||||||||| ||  |||| ||||||||  | |||||||||||||||| ||||| |||||| |||| | |||||||||| ||||||||||||||| ||    
T  39338658 tctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatt 39338757  T
Q  115 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 214  Q
    | |||||||||||| |||| | |||||||||||||| |||||||||| |||||||| ||||||| ||| |||||||||||||||||  | || |||||||    
T  39338758 tctggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctccgattgtcccctgacatcaatg 39338857  T
Q  215 ctgaaaccaggaaggttggtat 236  Q
    |||||||||| |||||| ||||    
T  39338858 ctgaaaccagaaaggttagtat 39338879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 39353505 - 39353717
Alignment:
Q  19 atggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtg 118  Q
    |||||||| ||  |||| ||||||||| | |||||||||||||||| |||||||||||| |||||| |||| ||||| ||||||||||||||| ||| ||    
T  39353505 atggatgtgctttctggtagaaaaaccggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctg 39353604  T
Q  119 gatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatgctga 218  Q
    |||||||||| |||| | ||||||||||||||||||||||||| |||||||| ||||||| | |  |||||||||| |||||  |||| |||||||||||    
T  39353605 gatactgtgagcaaactgatatccattctccttatgttactgtctatgaatctttgctctatccaacatggctccggttgtccccagacatcaatgctga 39353704  T
Q  219 aaccaggaaggtt 231  Q
    |||||| ||||||    
T  39353705 aaccagaaaggtt 39353717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 39366011 - 39366227
Alignment:
Q  15 tctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtt 114  Q
    |||||||||||| ||  |||| ||||||||  | |||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||| ||    
T  39366011 tctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatt 39366110  T
Q  115 tgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatg 214  Q
    | ||||||||| || |||| | |||||||||||||| |||||||||| |||||||| || |||| ||| |||||||||||||||||  | || |||||||    
T  39366111 tctggatactgcgagcaaactgatatccattctcctcatgttactgtctatgaatctttactctattcagcatggctccgattgtcccctgacatcaatg 39366210  T
Q  215 ctgaaaccaggaaggtt 231  Q
    |||||||||| ||||||    
T  39366211 ctgaaaccagaaaggtt 39366227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 39589474 - 39589258
Alignment:
Q  32 ctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaaca 131  Q
    |||| ||||||||  | |||||||||||||||||||||||||||||||| ||| | |||||||| ||||| ||||||||| ||| |||||||||||| ||    
T  39589474 ctggtagaaaaactggtggatatattggtgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagca 39589375  T
Q  132 aaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatgctgaaaccaggaaggtt 231  Q
    |||| ||||||| |||||| ||||||||||||||||||| ||||||| ||| |||||||| |||||| || | |||||| |    ||||| |||||||||    
T  39589374 aaatgatatccactctcctcatgttactgtatatgaatctttgctctattcagcatggcttcgattgccttcggaaatcgagaaagaaacaaggaaggtt 39589275  T
Q  232 ggtatctgaatcccatg 248  Q
    ||| | |||||||||||    
T  39589274 ggtgtttgaatcccatg 39589258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 231
Target Start/End: Complemental strand, 1084967 - 1084783
Alignment:
Q  49 ggatatattggtgggaccatcacaatttctggctattcaaagaa--gcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattc 146  Q
    |||||||||||||||| ||||| ||||||||||||| || ||||  ||| ||||| ||| ||||| ||| |||||||||||| ||||   ||||||||||    
T  1084967 ggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaaacatttacaagaatttctggatactgtgagcaaatagatatccattc 1084868  T
Q  147 tccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatgctgaaaccaggaaggtt 231  Q
    |||| || ||||||| || || || ||||||| ||| ||||||||||||||| |  | || || |||||||||||||||||||||    
T  1084867 tcctcattttactgtctacgagtctttgctctattcagcatggctccgattgacctcggacattaatgctgaaaccaggaaggtt 1084783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 39575251 - 39575017
Alignment:
Q  17 tgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttg 116  Q
    ||||||||||||| ||||| || ||||   | ||||||||| |||||| ||||||| |||| ||  || | || ||||| ||||||||||||||| |||     
T  39575251 tgatggatgtacttgctggtaggaaaagtgggggatatattagtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttc 39575152  T
Q  117 tggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatgct 216  Q
     ||||||||||| |||||| |||| || |||||| || |||| || ||||| || ||||||| ||| ||||||||||| ||| | || ||||||||| |     
T  39575151 cggatactgtgagcaaaatgatatacactctcctcatattacggtctatgagtctttgctctattcagcatggctccggttgccagcggaaatcaataca 39575052  T
Q  217 gaaaccaggaaggttggtatctgaatcccatgttg 251  Q
    ||||| ||||||||||| || |||||  |||||||    
T  39575051 gaaactaggaaggttggcatttgaatatcatgttg 39575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 505
Target Start/End: Complemental strand, 39589097 - 39588902
Alignment:
Q  313 actaatggatgcagatgttcatcgaggaagttatggagcttgtagaactgaccccgctgagggatacaattgttg---tgcctggtgctactggtctctc 409  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| || || | |||||| |||||| ||||||| |   |||| || | || |||||| ||    
T  39589097 actaatggttgcagatgttcattgaggaagtcatggagcttgtggagctaaacccgcttagggatgcaattgtcggattgccaggggttagtggtctatc 39588998  T
Q  410 tacactacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaag 505  Q
     ||    || || |||||||||||  |||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  39588997 gacggagcaacgcaaaaggttgacagttgcagttgagttagtggctaatccttctataatattcatggatgagccaacttcggggctagatgcaag 39588902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 39339044 - 39339132
Alignment:
Q  417 cagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaag 505  Q
    ||||| |||||| ||||| |||| || ||||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  39339044 cagcgcaaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgagccaacttctgggctagatgcaag 39339132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 505
Target Start/End: Complemental strand, 39563937 - 39563820
Alignment:
Q  388 tgcctggtgctactggtctctctacactacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaac 487  Q
    ||||||||| || ||||||||| ||    ||||| ||| ||||||| ||||| || ||||| || || |||||||||||||| ||||||||||| |||||    
T  39563937 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 39563838  T
Q  488 ttcagggctagatgcaag 505  Q
    ||| ||||||||||||||    
T  39563837 ttctgggctagatgcaag 39563820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 39353887 - 39353975
Alignment:
Q  417 cagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaag 505  Q
    ||||| |||||| ||||| |||| || ||||| || || |||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  39353887 cagcgcaaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaag 39353975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 502
Target Start/End: Original strand, 39366438 - 39366552
Alignment:
Q  388 tgcctggtgctactggtctctctacactacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaac 487  Q
    ||||||||| || ||||||||| |||   ||||| |||||| | ||| |||| || || || || || |||||||||||||| |||||||||||||||||    
T  39366438 tgcctggtgttagtggtctctcgacagagcagcgcaaaaggctaactgttgcagttgaattggtagctaatccttcaataatattcatggatgagccaac 39366537  T
Q  488 ttcagggctagatgc 502  Q
    ||| |||||||||||    
T  39366538 ttctgggctagatgc 39366552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 39547277 - 39547188
Alignment:
Q  417 cagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaaga 506  Q
    ||||| |||||| |||||||||| || ||||| || || |||||||| ||||| |||||||||||||||||||| || || |||||||||    
T  39547277 cagcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaaga 39547188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 39537812 - 39537724
Alignment:
Q  417 cagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaag 505  Q
    ||||| |||||| |||||||||| || ||||| || || |||||||| ||||| |||||||||||||||||||| || || ||||||||    
T  39537812 cagcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaag 39537724  T

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Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 504
Target Start/End: Complemental strand, 1084608 - 1084527
Alignment:
Q  423 aaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaa 504  Q
    |||||| |||||||||| || ||||| ||  | |||||||| ||||| || ||||||||||||||||| |||||||||||||    
T  1084608 aaaaggctgactattgcagttgagttggtttctaatccttctataatatttatggatgagccaacttctgggctagatgcaa 1084527  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 39574483 - 39574433
Alignment:
Q  456 aatccttcaataatgttcatggatgagccaacttcagggctagatgcaaga 506  Q
    |||||||| || || |||||||||||||||||||| ||| |||||||||||    
T  39574483 aatccttctatcatattcatggatgagccaacttctgggttagatgcaaga 39574433  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 4501668 - 4501753
Alignment:
Q  421 gaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaaga 506  Q
    |||| ||| |||| |||||||||||| | || || ||||||||||| || |||||||||||||||||||| || ||||||||||||    
T  4501668 gaaagaggctgacaattgcggtcgagcttgttgctaatccttcaatcatattcatggatgagccaacttctggtctagatgcaaga 4501753  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 490
Target Start/End: Complemental strand, 44210781 - 44210679
Alignment:
Q  388 tgcctggtgctactggtctctctacactacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaac 487  Q
    ||||||||| || ||||||||| ||   ||| || ||||||||||||||||| || ||  ||||||| ||||| || ||||| ||||||||||| |||||    
T  44210781 tgcctggtgttagtggtctctcaacggaacaacgtaaaaggttgactattgcagttgaactagtggctaatccgtccataattttcatggatgaaccaac 44210682  T
Q  488 ttc 490  Q
    |||    
T  44210681 ttc 44210679  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 43457083 - 43457033
Alignment:
Q  456 aatccttcaataatgttcatggatgagccaacttcagggctagatgcaaga 506  Q
    ||||||||||| || ||||||||||| ||||||||||| || |||||||||    
T  43457083 aatccttcaatcattttcatggatgaaccaacttcaggtcttgatgcaaga 43457033  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 2148694 - 2148656
Alignment:
Q  320 gatgcagatgttcatcgaggaagttatggagcttgtaga 358  Q
    |||||||||||| || |||||||||||||||||||||||    
T  2148694 gatgcagatgtttattgaggaagttatggagcttgtaga 2148656  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 2160522 - 2160484
Alignment:
Q  320 gatgcagatgttcatcgaggaagttatggagcttgtaga 358  Q
    |||||||||||| || |||||||||||||||||||||||    
T  2160522 gatgcagatgtttattgaggaagttatggagcttgtaga 2160484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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