View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_13 (Length: 518)
Name: NF15642_low_13
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 43 - 340
Target Start/End: Complemental strand, 54573746 - 54573459
Alignment:
| Q |
43 |
caaaataccaataccttttaactagacttacttcagttctttcgtcaaaatcataagaacgaagaattgatttccagtttccttctccaattctgnnnnn |
142 |
Q |
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| T |
54573746 |
caaaataccaataccttttaactagacttacttcagttctttcgtcaaaatcataagaacgaagaattgatttccagtttccttctccaattctgaaaaa |
54573647 |
T |
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| Q |
143 |
nnnnnnnnnnnnnnntgaatgagaatatgaatttgtagcaaaagtgaatttaattctatctatattctcaaatgaagcataaatagttagggtaaaataa |
242 |
Q |
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| T |
54573646 |
aaaaa----------tgaatgagaatatgaatttgtagcgaaagtgaatttaattctatctatattctcaaatgaagcataaatagttagggtaaaataa |
54573557 |
T |
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| Q |
243 |
tttgaatagtaaaatggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
54573556 |
tttgaatagtaaaatggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagacactaaaaatatcagaatttcacacactatcaa |
54573459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 44 - 344
Target Start/End: Complemental strand, 55157030 - 55156734
Alignment:
| Q |
44 |
aaaataccaataccttttaactagacttacttcagttctttcgtcaaaatcataagaacgaagaattgatttccagtttccttctccaattctgnnnnnn |
143 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55157030 |
aaaaaaccaataccttttaactagacttacttcagttctttcgtcaaatgcataagaacgaagaattgatttccagtttccttctccaattct------- |
55156938 |
T |
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| Q |
144 |
nnnnnnnnnnnnnntgaatgagaatatgaatttgtagcaaaagtgaatttaattctatctat---attctcaaatgaagcataaatagttagggtaaaat |
240 |
Q |
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| T |
55156937 |
aaaaaaaagaaagataaatgagaatatgaatttgtagtgaaagtgaatttaattctatttattatattctcaaatgaagcaaaaatagttgggataaaat |
55156838 |
T |
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| Q |
241 |
aatttgaatagtaaaatggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa |
340 |
Q |
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| T |
55156837 |
aatttgaatgataaaatggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa |
55156738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 55156653 - 55156572
Alignment:
| Q |
425 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtcctt |
506 |
Q |
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| T |
55156653 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtcctt |
55156572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 54573386 - 54573308
Alignment:
| Q |
425 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtc |
503 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
54573386 |
attgtatcaatgaaatacacaacaaaatattatagtaacttgattggttaaaacaagtacatacacttcaattccggtc |
54573308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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