View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_17 (Length: 459)
Name: NF15642_low_17
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_17 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 111 - 442
Target Start/End: Complemental strand, 335997 - 335666
Alignment:
| Q |
111 |
tagcaacacaagaaagttttagtaagtttgattaatagcacgatcaggaataataagatctactattatatataatatcaaagggatttccaaaccaaga |
210 |
Q |
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| T |
335997 |
tagcaacacaagaaagtttttgtaggtttgattaatagcacgatcaggaataataagatctactattatatataatatcaaagggatttccaaaccaaga |
335898 |
T |
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| Q |
211 |
ggaaaatccctcaatgcaccatgtcagtaatgcacaaaatgatcggaaagggatcgcatgcaataccacaacaagagtatatatctacagcagcattcag |
310 |
Q |
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| T |
335897 |
ggaaaatccctcaatgcaccatgtcagtaatgcacaaaatgatcggaaagggatcgcatgcaataccacaacaagagtatatatctacagcagcattcag |
335798 |
T |
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| Q |
311 |
ctaaacactgacataatactccttccgtccctaagtataaacacctattgaatttggttgctatagaatttggaagatttcaccaatagaaaactaaacc |
410 |
Q |
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| T |
335797 |
ctaaacactgacataatactccctccgtccctaagtataaacacctattgaatttggttgctatagaatttggaagatttcaccaatacaaaactaaact |
335698 |
T |
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| Q |
411 |
gacaaaccttctagaatttcatgtgccaatct |
442 |
Q |
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| T |
335697 |
gacaaaccttctagaatttcatgtgccaatct |
335666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 336107 - 336052
Alignment:
| Q |
1 |
ctaccaaatttttacctcacaaaagcaactatagcctagagccaatctcataacat |
56 |
Q |
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| T |
336107 |
ctaccaaatttttacctcacaaaagaaactatagcctagagccaatctcataacat |
336052 |
T |
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