View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15642_low_2 (Length: 1016)
Name: NF15642_low_2
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 116 - 549
Target Start/End: Original strand, 52140290 - 52140714
Alignment:
| Q |
116 |
acatcttgatctttcatagcaacacgacatgtttggtcacggttcataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggac |
215 |
Q |
| |
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|||| ||||||||||||||||||| ||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52140290 |
acattttgatctttcatagcaacatgacgtgtttcgtcccggttcataggttgcgagcattgatcacacgatgtaataccataagtgcatccatttggac |
52140389 |
T |
|
| Q |
216 |
acatgtaaagcgaggttcctagattgtgatcatcatttggaatcgttggatcaaagagaacataattctggttgaggttttggagagtagtactagtatg |
315 |
Q |
| |
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||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
52140390 |
acatgtaaaccgagattcctagactgtgatcatcatttggaattgttggatcaaagagaacataattctggttgagattttggacagtagtactagtatg |
52140489 |
T |
|
| Q |
316 |
atatagatttcctaagctgccaaacaaatgcttgtcgttgtttctcatgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtct |
415 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
52140490 |
atatagatttcctaagctgccaaacaaatgcatgtcattgttgctcatgagccttacaacagtaccaaaagacaagcgaaacatgtttaagagagagttt |
52140589 |
T |
|
| Q |
416 |
atggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaacagaagcttaagggtcactttggttgaagaagatgaagaagaagcca |
515 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
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| T |
52140590 |
atggcagctttggatgcttcagcgaatagaactttgttttgctttttgtcaaccagaagcttaagggttactttggt---------tgaagaagaagcca |
52140680 |
T |
|
| Q |
516 |
tattgaaagataatgcattaacagagaggctagt |
549 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
52140681 |
tattgaaagataatgcattaacagagaggctagt |
52140714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 546 - 683
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
| Q |
546 |
tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct |
645 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52140746 |
tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct |
52140845 |
T |
|
| Q |
646 |
aatttaattcgatgtatttatgtacaaacagttgccac |
683 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52140846 |
aatttaattcgatgtatttatgtacaaacagttgccac |
52140883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 270 - 501
Target Start/End: Original strand, 52130840 - 52131077
Alignment:
| Q |
270 |
agagaacataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgt---cgttgtttctc---at |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||| || ||||||| ||| |||| || || || |
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| T |
52130840 |
agagaacataattctggttgaggttttggagagtactactagtgtgatgcagattgcctaagctacccgccaaatgcatgttaacgttattgctacttat |
52130939 |
T |
|
| Q |
364 |
gagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttg |
463 |
Q |
| |
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|||||||| ||| || ||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||| || || |||||||||||||||||| || |
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| T |
52130940 |
gagccttaaaactgtgccaaaagacaagtgaaacatgtttaagagagagtctacggcagcttttgatgcttctgcaaacagaactttgttttgctttgtg |
52131039 |
T |
|
| Q |
464 |
tcaaacagaagcttaagggtcactttggttgaagaaga |
501 |
Q |
| |
|
|||| | ||||||||||||||| |||||| |||||||| |
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| T |
52131040 |
tcaaccggaagcttaagggtcattttggtggaagaaga |
52131077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 52130572 - 52130680
Alignment:
| Q |
26 |
acttgtttgaaatcgaacttgttaagtaacgtaacaattgaaattggtgagaagggatgaataaccaaatcatccatcaacatgaaagttacatcttgat |
125 |
Q |
| |
|
|||||||||| || ||||||||| | |||||||| || |||||||| | ||| ||| ||||| || ||||||||||||||||||||| |||||| ||||| |
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|
| T |
52130572 |
acttgtttgatattgaacttgttgattaacgtaataactgaaattgctaagatgggctgaatcactaaatcatccatcaacatgaaaattacattttgat |
52130671 |
T |
|
| Q |
126 |
ctttcatag |
134 |
Q |
| |
|
||||||||| |
|
|
| T |
52130672 |
ctttcatag |
52130680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 785 - 846
Target Start/End: Complemental strand, 6923571 - 6923510
Alignment:
| Q |
785 |
taaactagattgtctacccgtgctgccgcatgggtcataatttgctaaaaatattagttgaa |
846 |
Q |
| |
|
|||||||||| |||||||||||| || ||| |||||||| | ||||||||||||||||||| |
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|
| T |
6923571 |
taaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaa |
6923510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 732
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
| Q |
689 |
agcttgattttgagttctcttatcctcctctgcaattggccaac |
732 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
52140901 |
agcttaattttgagttctcttaatctcctctgcaattggccaac |
52140944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 161 - 549
Target Start/End: Complemental strand, 17525380 - 17525002
Alignment:
| Q |
161 |
ataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggacacatgtaaagcgaggttcctagattgtgatcatcatttggaatcg |
260 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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|
| T |
17525380 |
ataggttgcgagcattgatc-cacgatgtaataccttaagtgcatccatttggacacatgtaaaacgaggttcctaggctgtgatcatcatttggaattg |
17525282 |
T |
|
| Q |
261 |
ttggatcaaagagaacataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgtcgttgtttct |
360 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
17525281 |
ttggatcgaagagaacgtaattttggttgagattttggacagtagtactagtatgatacagatttcctaagctgccaaacaaatgcatgtcgttgtagct |
17525182 |
T |
|
| Q |
361 |
catgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgcttt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| || || | |||||||||||||||| |
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|
| T |
17525181 |
catgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcagcttgtgatgattcggcaaacataactttgttttgcttt |
17525082 |
T |
|
| Q |
461 |
ttgtcaaacagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt |
549 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17525081 |
gtgtcaaccagaagcctaagggtcactttggttgaag---------aagaagccatattgaaagataatgcattaacagagaggctagt |
17525002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 558 - 660
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
| Q |
558 |
tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga |
657 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
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|
| T |
17524955 |
tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga |
17524857 |
T |
|
| Q |
658 |
tgt |
660 |
Q |
| |
|
||| |
|
|
| T |
17524856 |
tgt |
17524854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 664 - 788
Target Start/End: Complemental strand, 17524571 - 17524437
Alignment:
| Q |
664 |
tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa-catttgagcaagagaaacttgg |
753 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17524571 |
tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaaacattggagcaagagaaacttgg |
17524472 |
T |
|
| Q |
754 |
tagaataccgcgatggttcacacaaatttgttaaa |
788 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
17524471 |
tagagtaccgcgatgtttcacacaaatttcttaaa |
17524437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 786 - 823
Target Start/End: Complemental strand, 16367918 - 16367881
Alignment:
| Q |
786 |
aaactagattgtctacccgtgctgccgcatgggtcata |
823 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
16367918 |
aaactagatcgtctacccgtgctgccgcacgggtcata |
16367881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 802 - 1010
Target Start/End: Original strand, 37615638 - 37615847
Alignment:
| Q |
802 |
ccgtgctgccgcatgggtcataatttgctaaaaatattagttgaaagcaatc---atatatccgataaaattaatatatagttactcaatgtaccaaatt |
898 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
37615638 |
ccgtgctgctgcacgggtcataatttactaaaactattagttgaaagccattgttatatatccaataaaattaatatatagttactcaatatactgaatt |
37615737 |
T |
|
| Q |
899 |
gttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattat--agatatgatagacatacataaccataattgtccggc |
996 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||| ||||||||||||||||||| | |||||||| ||||||||||| |||||||||| |||| |
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|
| T |
37615738 |
gttctgacgtaatgcgattaatt----gacgtacgatcgtcttacataggttaaaaaaattcgaagatatgagagacatacatagccataattgttcggc |
37615833 |
T |
|
| Q |
997 |
ctatgcttctccac |
1010 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
37615834 |
ctatgttactccac |
37615847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 863 - 949
Target Start/End: Complemental strand, 22083733 - 22083651
Alignment:
| Q |
863 |
ataaaattaatatatagttactcaatgtaccaaattgttctgactaaatgcgattaattaattgacgtatgatcatcttacataggt |
949 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
22083733 |
ataaaattaagatatagttactcaatgtactgaattgttctgacgtaatgcgatt----aattcacgtatgatcgtcttacataggt |
22083651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 824
Target Start/End: Complemental strand, 52130795 - 52130754
Alignment:
| Q |
783 |
gttaaactagattgtctacccgtgctgccgcatgggtcataa |
824 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52130795 |
gttagactagattgtctacccgtgctgccgcacgggtcataa |
52130754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 788 - 824
Target Start/End: Complemental strand, 24763355 - 24763319
Alignment:
| Q |
788 |
actagattgtctacccgtgctgccgcatgggtcataa |
824 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24763355 |
actagattgtctacccgtgctgccgcacgggtcataa |
24763319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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