View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_20 (Length: 436)
Name: NF15642_low_20
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 79 - 413
Target Start/End: Complemental strand, 42745345 - 42745006
Alignment:
| Q |
79 |
catctgtgtgaataaaccattctgatgataattggtctttgctttcaccattcaccatt-------tcaaccgttgctgttaaaatagtagctagatatt |
171 |
Q |
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| T |
42745345 |
catctgtgtgaataaaccattctgatgataattggtctttgctttcaccattcaccattcaccatttcaaccgttgctgttaaaatagtagctagatatt |
42745246 |
T |
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| Q |
172 |
ggattattggttttt-ataaagcaagtttgaataaaacaagcattatatgggggctgttttgaaattcctcaatattttatactactaaattgtgaacta |
270 |
Q |
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| T |
42745245 |
ggattattggttttttataaagcaagtttgaataaaacaagcattatatgggggctgttttgaaattcctcaatattttatacta---aattgtgaacta |
42745149 |
T |
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| Q |
271 |
gctacctaatgggcggtccaacaaattatttgttggtgtgcaggtgtgagttggaagtcccgcaatcaatagaataattgaagttgaaatgcatataagt |
370 |
Q |
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| T |
42745148 |
gctacctaatgggcggtccaacaaattatttgttggtgtgcaagtgtgagttggaagtcccgcaatcaatagaataattgaagttgaaatgcatataagt |
42745049 |
T |
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| Q |
371 |
caagaaaagaaacttatatatttaatgcattaaagttttgggc |
413 |
Q |
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| T |
42745048 |
gaagaaaaaaaacttatatatctaatgcattaaagttttgggc |
42745006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42745458 - 42745378
Alignment:
| Q |
1 |
ctactacaaggatgaagaaattgaatattatacattatttggattaaggataatatttctcctcatacttcactaatacat |
81 |
Q |
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| T |
42745458 |
ctactacaaggatgaagaaattgaatattatacattatttggattaaggataatatttctcctcatacttcactaatacat |
42745378 |
T |
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