View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_21 (Length: 425)
Name: NF15642_low_21
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 4356670 - 4356466
Alignment:
| Q |
12 |
atgaaatctcaactgatttatgttccttttaatatattttccatttaatataatggaacagaataatcctgtaaatatgaagtgcactgatatgtattta |
111 |
Q |
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| T |
4356670 |
atgaaatcttaactgatttatgttccttttaatatattttccatttaat-----ggaacagaataatcctgtaaatatcaagtgcactgatatgtattta |
4356576 |
T |
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| Q |
112 |
atttaattttccttccagcaaaagaacacacatgcttcgttgaaattaatataacatgggctatagaaagatactaaaatat-aaagagaaattgatagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
4356575 |
atttaattttccttccagcaaaagaacacacatgcttcgttgaaattaatataacatgggctatagaaagataccagaatataaaagagaaattgatagt |
4356476 |
T |
|
| Q |
211 |
aacataactg |
220 |
Q |
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|||||||||| |
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| T |
4356475 |
aacataactg |
4356466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 4356396 - 4356279
Alignment:
| Q |
290 |
ccaaagatcataactaattagatagaacttctcaaaagcactaacaat--ctattaattaaacttgggcgcacatagcagtagtattggttggactacgt |
387 |
Q |
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| T |
4356396 |
ccaaagatcataactgattagataaaacttctcaaaagcactaacaatatctactaattaaacttggccgcacatagcagtagtattggttggac----t |
4356301 |
T |
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| Q |
388 |
acatcaaattccatgctgaaac |
409 |
Q |
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| T |
4356300 |
acatcaaattccatgctgaaac |
4356279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 290 - 409
Target Start/End: Original strand, 4674516 - 4674633
Alignment:
| Q |
290 |
ccaaagatcataactaattagatagaacttctcaaaagcactaacaat--ctattaattaaacttgggcgcacatagcagtagtattggttggactacgt |
387 |
Q |
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| T |
4674516 |
ccaaagatcataactgattagataaaacttctcaaaagcactaacaatatctactaattaaacttggccgcacatagcagtagtattggttggac----t |
4674611 |
T |
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| Q |
388 |
acatcaaattccatgctgaaac |
409 |
Q |
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|||||||||||||||||||||| |
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| T |
4674612 |
acatcaaattccatgctgaaac |
4674633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 4674383 - 4674445
Alignment:
| Q |
159 |
aatataacatgggctatagaaagatactaaaatataaa-gagaaattgatagtaacataactg |
220 |
Q |
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| T |
4674383 |
aatataacatgagctatagaaagataccagaatataaaagagaaattgatagtaacataactg |
4674445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 4674199 - 4674310
Alignment:
| Q |
41 |
taatatattttccatttaatataatggaacagaataatcctgtaaa-tatgaagtgcactgatatgtatttaatttaattttccttccagcaaaagaaca |
139 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||| | ||| ||| ||||||||| |||| ||||||| |||||||||||| |
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| T |
4674199 |
taatatattttccatttaat-----ggaacagaataatcctgtaaaatatcaggtgtacttatatgtattaaatt-----ttccttctagcaaaagaaca |
4674288 |
T |
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| Q |
140 |
cacatgcttcgttgaaattaat |
161 |
Q |
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||||||||| |||||| ||||| |
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| T |
4674289 |
cacatgcttggttgaatttaat |
4674310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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