View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15642_low_23 (Length: 361)

Name: NF15642_low_23
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15642_low_23
NF15642_low_23
[»] chr7 (12 HSPs)
chr7 (1-265)||(3601546-3601825)
chr7 (1-84)||(30493624-30493707)
chr7 (1-146)||(22289260-22289414)
chr7 (1-82)||(29200969-29201050)
chr7 (11-82)||(16098582-16098653)
chr7 (11-81)||(16732026-16732096)
chr7 (11-81)||(17710160-17710230)
chr7 (146-203)||(37490017-37490074)
chr7 (145-206)||(38065332-38065393)
chr7 (11-71)||(1581719-1581779)
chr7 (1-97)||(3275111-3275207)
chr7 (98-146)||(17877427-17877475)
[»] chr4 (15 HSPs)
chr4 (1-146)||(55735028-55735182)
chr4 (17-123)||(28537817-28537932)
chr4 (7-84)||(51259549-51259626)
chr4 (1-80)||(43840320-43840399)
chr4 (1-146)||(18442161-18442313)
chr4 (17-81)||(47226360-47226424)
chr4 (17-81)||(51735002-51735066)
chr4 (1-146)||(37245866-37246020)
chr4 (11-146)||(49951332-49951476)
chr4 (12-146)||(41835336-41835479)
chr4 (1-146)||(56065648-56065806)
chr4 (98-146)||(21321546-21321594)
chr4 (11-59)||(29655690-29655738)
chr4 (18-82)||(44936113-44936177)
chr4 (98-146)||(51735091-51735139)
[»] chr2 (13 HSPs)
chr2 (1-146)||(88578-88732)
chr2 (11-82)||(13109893-13109964)
chr2 (1-82)||(1417995-1418076)
chr2 (7-71)||(11292083-11292146)
chr2 (11-82)||(22845628-22845699)
chr2 (1-71)||(12130652-12130722)
chr2 (1-59)||(14827195-14827253)
chr2 (34-71)||(26198785-26198822)
chr2 (1-82)||(34695918-34695999)
chr2 (1-82)||(34718330-34718411)
chr2 (98-146)||(18345607-18345654)
chr2 (98-146)||(34696024-34696072)
chr2 (98-146)||(34718436-34718484)
[»] chr5 (14 HSPs)
chr5 (11-146)||(15988773-15988917)
chr5 (7-82)||(26597477-26597552)
chr5 (1-71)||(4268202-4268272)
chr5 (34-146)||(25730827-25730948)
chr5 (1-82)||(41940751-41940832)
chr5 (1-146)||(8388105-8388259)
chr5 (11-98)||(34652278-34652365)
chr5 (1-82)||(27292526-27292607)
chr5 (98-146)||(4268118-4268166)
chr5 (11-146)||(11375537-11375681)
chr5 (11-71)||(12660419-12660479)
chr5 (17-81)||(20205048-20205112)
chr5 (1-66)||(30222852-30222917)
chr5 (98-146)||(20204974-20205022)
[»] chr3 (12 HSPs)
chr3 (1-147)||(53497050-53497205)
chr3 (1-82)||(27608917-27608998)
chr3 (1-82)||(34497386-34497467)
chr3 (1-82)||(55199603-55199684)
chr3 (11-71)||(647187-647247)
chr3 (144-219)||(7640587-7640662)
chr3 (11-82)||(24176862-24176933)
chr3 (11-69)||(2615588-2615646)
chr3 (1-81)||(42340291-42340371)
chr3 (1-51)||(19117734-19117784)
chr3 (1-71)||(46007402-46007472)
chr3 (38-71)||(48227517-48227550)
[»] chr1 (10 HSPs)
chr1 (1-146)||(44527272-44527426)
chr1 (1-82)||(51113407-51113488)
chr1 (1-82)||(2885315-2885396)
chr1 (1-82)||(48949738-48949819)
chr1 (7-71)||(21031252-21031316)
chr1 (1-87)||(5609426-5609512)
chr1 (11-63)||(52109564-52109616)
chr1 (1-84)||(4395248-4395331)
chr1 (1-98)||(48166313-48166410)
chr1 (154-206)||(18157159-18157211)
[»] chr6 (10 HSPs)
chr6 (17-146)||(15606024-15606162)
chr6 (1-79)||(29368070-29368148)
chr6 (11-83)||(15053199-15053271)
chr6 (14-97)||(11731696-11731779)
chr6 (1-64)||(34104479-34104542)
chr6 (99-146)||(14680181-14680228)
chr6 (11-81)||(19690903-19690973)
chr6 (149-203)||(29610352-29610406)
chr6 (11-88)||(28107225-28107302)
chr6 (98-146)||(29368176-29368224)
[»] chr8 (8 HSPs)
chr8 (1-81)||(23854025-23854105)
chr8 (11-86)||(33642788-33642863)
chr8 (7-82)||(8451143-8451218)
chr8 (102-146)||(13415042-13415086)
chr8 (1-59)||(185605-185663)
chr8 (16-82)||(598266-598332)
chr8 (98-146)||(478176-478224)
chr8 (1-81)||(3606753-3606833)
[»] scaffold0005 (1 HSPs)
scaffold0005 (145-218)||(296950-297023)
[»] scaffold0922 (1 HSPs)
scaffold0922 (38-77)||(315-354)
[»] scaffold0446 (1 HSPs)
scaffold0446 (1-82)||(278-363)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 3601825 - 3601546
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttcaag 100  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||||    
T  3601825 aatagcataaaattctgaatcaccatggtccagagacgataaagcttgcactagagtagatgagtcggactcgaaaacaacccgatcttatatgttcaag 3601726  T
Q  101 tgaagggcctcgagtaaggctaccacttccccctccaaaactgtcaccttcatttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatag 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3601725 tgaagggcctcgagtaaggctaccacctccccctccaaaactgccaccttcatttaaactaataaggaagtaagtatttgtaagagtgttg-aaagatag 3601627  T
Q  201 tgttgcaagc----------------acttctcatatattatataagaatgctaaaattaattaatccaaagatgcacttg 265  Q
    ||||||||||                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3601626 tgttgcaagcactcctcatatattatactcctcatatattatataagaatgctaaaattaattaatccaaagatgcacttg 3601546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30493624 - 30493707
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctg 84  Q
    ||||| ||||||||| |||||||||||| || ||||||||||||||||||||| ||||  ||||||||||| ||| ||||||||    
T  30493624 aatagcataaaattctgaatcaccatggcccgaagacgatagagcttgcactagagtaattgagtcggactcgaagacaacctg 30493707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22289414 - 22289260
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc--- 97  Q
    ||||| ||||||||| |||||||||||| ||  ||||||||| |||||||||| ||||| ||||||||||| ||| ||| || | ||| || |||||       
T  22289414 aatagcataaaattctgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttccca 22289315  T
Q  98 ------aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          ||||||| ||| ||||||||||| ||||| |||||||||||||||||||    
T  22289314 acggcaaagtgaatggcatcgagtaaggcaaccacctccccctccaaaactgtca 22289260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29200969 - 29201050
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||| ||||| |||||||||||| ||| |||||||||||||||||||| ||||| |||||| |||| ||| ||||||    
T  29200969 aatagcatagaattctgaatcaccatggcccagagacgatagagcttgcactagagtagctgagtcagactcgaagacaacc 29201050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 16098653 - 16098582
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||||| ||  ||||||| ||||||| |||| ||||||||||||||||| ||| ||||||    
T  16098653 aattctgaatcaccatggcccggagacgatggagcttgtactagagtagatgagtcggactcgaagacaacc 16098582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 16732096 - 16732026
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    ||||| |||||||||||| ||  ||| |||||||||||||||| |||||| |||||||||| ||| |||||    
T  16732096 aattctgaatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaac 16732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 17710230 - 17710160
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    ||||| |||||||||||| ||  ||| |||||||||||||||| |||||| |||||||||| ||| |||||    
T  17710230 aattctgaatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaac 17710160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 37490017 - 37490074
Alignment:
Q  146 accttcatttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatagtgt 203  Q
    |||||||||||||| |||||| |||| ||| ||||  ||||||||||||||| |||||    
T  37490017 accttcatttaaaccaataagtaagtgagtgtttgagagagtgttgaaaagagagtgt 37490074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 38065393 - 38065332
Alignment:
Q  145 caccttcatttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatagtgttgc 206  Q
    |||||| |||||||| |||||| |||| ||||||||  ||||||||||| ||| ||||||||    
T  38065393 caccttgatttaaaccaataagaaagtgagtatttgagagagtgttgaagagagagtgttgc 38065332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 1581779 - 1581719
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    |||| ||||||||||||||||  ||||||||||| ||||| ||  |||||||||| |||||    
T  1581779 aatttcgaatcaccatggtccggagacgatagagtttgcattagtgtagatgagttggact 1581719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3275207 - 3275111
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc 97  Q
    ||||| ||||||||  |||||| | ||| | | ||| ||||| |||||||||| ||||| ||||||||||| ||| ||||||   ||||||||||||    
T  3275207 aatagcataaaattatgaatcatcgtggcctagagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccagtcctatatgttc 3275111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 17877475 - 17877427
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||||||||| ||||||||||||  | ||||||||||| |||||||    
T  17877475 aagtgaagggccttgagtaaggctacttcctccccctccaatactgtca 17877427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 55735182 - 55735028
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc--- 97  Q
    ||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||| |||| | | | || |||||       
T  55735182 aatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgca 55735083  T
Q  98 ------aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          ||||||||||||||||||||||||||  | ||||||||||| |||||||    
T  55735082 acaacaaagtgaagggcctcgagtaaggctactgcctccccctccaatactgtca 55735028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 28537817 - 28537932
Alignment:
Q  17 gaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc---------aagtgaaggg 107  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||||| | ||| || |||||         ||||||||||    
T  28537817 gaatcaccatggcccagagacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaaggg 28537916  T
Q  108 cctcgagtaaggctac 123  Q
    ||||||||||||||||    
T  28537917 cctcgagtaaggctac 28537932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 51259549 - 51259626
Alignment:
Q  7 ataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctg 84  Q
    ||||||||| |||||||||||| || |||||||||| |||||||||| ||||| ||||||||||| ||| ||||||||    
T  51259549 ataaaattctgaatcaccatggcccgaagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacctg 51259626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 43840320 - 43840399
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaa 80  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||| ||| ||| ||||    
T  43840320 aatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagagtagctgagtcgaactcgaagacaa 43840399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 18442161 - 18442313
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc--- 97  Q
    ||||| ||| ||||| |||||||||||| |||||||||||| |||||||||  |||||||||||||| ||| ||||| |||| | | | || |||||       
T  18442161 aatagcatagaattctgaatcaccatgggccaaagacgatatagcttgcac--tagtagatgagtcgcactcgaaaataacccggttccatctgttcgca 18442258  T
Q  98 ------aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          ||||| ||||||||||||||||||||  | ||||||||||| |||||||    
T  18442259 acagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatactgtca 18442313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 47226360 - 47226424
Alignment:
Q  17 gaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||||||||||||| ||| |||||    
T  47226360 gaatcaccatggcctgaagacgatagagcttgctctaaagtagatgagtcggactcgaacacaac 47226424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 51735002 - 51735066
Alignment:
Q  17 gaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||| | |||| ||| |||||    
T  51735002 gaatcaccatggtccagagacgatagagcttgcactagagtagaggagcctgactcgaagacaac 51735066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 37245866 - 37246020
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc--- 97  Q
    ||||| ||| ||||| |||||||||||| ||| |||||| ||||||||||||| |||||  ||||| |||| ||| |||||| | ||| || |||||       
T  37245866 aatagcatagaattctgaatcaccatggcccagagacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcaca 37245965  T
Q  98 ------aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          |||||||  || ||||||||||||||  | |||||||||||||||||||    
T  37245966 taagcaaagtgaatagcatcgagtaaggctactgcctccccctccaaaactgtca 37246020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 49951476 - 49951332
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc---------aagt 101  Q
    ||||| ||||||||| || || |||| |||| ||||||||||| |||||| |||||||||| ||| |||||  | | | || |||||         ||||    
T  49951476 aattctgaatcaccacggcccgaagatgataaagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagt 49951377  T
Q  102 gaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||||||||||||||||||  | ||||||||||| |||||||    
T  49951376 gaagggcctcgagtaaggctactgcctccccctccaatactgtca 49951332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 41835336 - 41835479
Alignment:
Q  12 attccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgtt---------caagtg 102  Q
    ||||||||||||||||| ||  ||||||||| | |||||||| ||||||||| ||| ||| ||| |||||| | ||| || ||||          || ||    
T  41835336 attccgaatcaccatggcccggagacgatagcgtttgcactagagtagatgaatcgaactcgaagacaacccggtcccatctgtttgcatccgcaaaatg 41835435  T
Q  103 aagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||| |||||||||||||||  | |||||||||||||||||||    
T  41835436 aagggtctcgagtaaggctactgcatccccctccaaaactgtca 41835479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 56065806 - 56065648
Alignment:
Q  1 aatagaataaaattccg----aatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgtt 96  Q
    ||||| |||||||||||    |||||||||||||   ||| ||||| |||||||||| ||||| ||||||||||| ||| |||||| | ||| |||| ||    
T  56065806 aatagcataaaattccgaattaatcaccatggtctggagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatatt 56065707  T
Q  97 c---------aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    |         ||||||| ||| ||||||||||| ||  | |||||||||||||||||||    
T  56065706 cccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtca 56065648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 21321594 - 21321546
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    |||||||||||||||||||||||||     |||||||||||||||||||    
T  21321594 aagtgaagggcctcgagtaaggctattgtctccccctccaaaactgtca 21321546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 29655690 - 29655738
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtag 59  Q
    ||||| |||||||||||| || |||| |||||||||||||||| |||||    
T  29655690 aattctgaatcaccatggcccgaagatgatagagcttgcactagagtag 29655738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 44936113 - 44936177
Alignment:
Q  18 aatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||||| ||| || || ||||||||| |||||||| |||| |||||||||||| ||| ||||||    
T  44936113 aatcaccgtggcccgaaaacgatagagtttgcactagagtaaatgagtcggactcgaacacaacc 44936177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 51735091 - 51735139
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||| ||| ||||||||||||||  | |||||||||||||||||||    
T  51735091 aagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtca 51735139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 88732 - 88578
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgtt---- 96  Q
    ||||| ||| ||||| ||||||||||| ||   |||||||||||||||||||| ||||||||||||||||| ||| |||||| | ||| || ||||        
T  88732 aatagcatagaattctgaatcaccatgatcttgagacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagca 88633  T
Q  97 -----caagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          ||||||||||||||||||||||||||  | |||||||||||||||||||    
T  88632 tcaacaaagtgaagggcctcgagtaaggctactgcctccccctccaaaactgtca 88578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 13109893 - 13109964
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    |||||| ||||||||||| || ||||||||||||||| ||||| |||||| |||||||||| ||| ||||||    
T  13109893 aattccaaatcaccatggcccgaagacgatagagcttccactagagtagaagagtcggactcgaagacaacc 13109964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1417995 - 1418076
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||| ||||| |||||||||| ||||| |||| |||||||||| |||| |||||||||||| |||| ||| ||||||    
T  1417995 aatagcatagaattctgaatcaccatagtccagagacaatagagcttgaactagagtagatgagtcagactcgaagacaacc 1418076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 11292083 - 11292146
Alignment:
Q  7 ataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    ||||||||  |||||| ||||| | ||| |||||||||||||||||| |||||||||||||||||    
T  11292083 ataaaattttgaatcatcatggccgaaa-acgatagagcttgcactagagtagatgagtcggact 11292146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 22845699 - 22845628
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||||||||||| ||   |||||||||||||||||||| ||||||| ||| ||||| ||| ||||||    
T  22845699 aattctgaatcaccatgatctggagacgatagagcttgcactagagtagattagttggactcgaagacaacc 22845628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12130652 - 12130722
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    ||||| ||| ||||| |||||||||||  || |||| ||||||||||| |||| |||||||||||| ||||    
T  12130652 aatagcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagact 12130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14827253 - 14827195
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtag 59  Q
    ||||| ||| |||| ||||||||||||  ||||| |||||||||||||||||| |||||    
T  14827253 aatagcatagaatttcgaatcaccatgacccaaacacgatagagcttgcactagagtag 14827195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 26198822 - 26198785
Alignment:
Q  34 agacgatagagcttgcactatagtagatgagtcggact 71  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  26198822 agacgatagagcttgcactagagtagctgagtcggact 26198785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34695918 - 34695999
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||||||||| |||||||||||  ||  ||||||||  |||||||||| |||||  |||||||||| ||| ||||||    
T  34695918 aatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacc 34695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34718330 - 34718411
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||||||||| |||||||||||  ||  ||||||||  |||||||||| |||||  |||||||||| ||| ||||||    
T  34718330 aatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacc 34718411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 18345607 - 18345654
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||||||||||||||||||||||  | ||||||| |||||||||||    
T  18345607 aagtgaagggcctcgagtaaggctactgcctccccct-caaaactgtca 18345654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 34696024 - 34696072
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||| ||||| ||||||||||||  | |||||||||||||||||||    
T  34696024 aagtgaatggccttgagtaaggctactgcctccccctccaaaactgtca 34696072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 34718436 - 34718484
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||| ||||| ||||||||||||  | |||||||||||||||||||    
T  34718436 aagtgaatggccttgagtaaggctactgcctccccctccaaaactgtca 34718484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 15988773 - 15988917
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc---------aagt 101  Q
    |||||||||||||||||| |  |||||||||||| |||||||| ||||| |||| |||||||||| |||||| | ||| ||||||||         ||||    
T  15988773 aattccgaatcaccatggcctgaagacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagt 15988872  T
Q  102 gaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
     ||||||||||||||||| |||  | |||||||||||||||||||    
T  15988873 aaagggcctcgagtaaggttactgcctccccctccaaaactgtca 15988917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 26597477 - 26597552
Alignment:
Q  7 ataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||    
T  26597477 ataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 26597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4268272 - 4268202
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    ||||| ||| |||||||||||||||||| ||  ||| |||||||||||||||| |||||||||||||||||    
T  4268272 aatagcatagaattccgaatcaccatggcccggagatgatagagcttgcactagagtagatgagtcggact 4268202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 25730948 - 25730827
Alignment:
Q  34 agacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc---------aagtgaagggcctcgagtaaggctacc 124  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||    ||| || |||||         ||||||||||||||||||||||||||     
T  25730948 agacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctact 25730849  T
Q  125 acttccccctccaaaactgtca 146  Q
     | |||||||||||||||||||    
T  25730848 gcctccccctccaaaactgtca 25730827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41940751 - 41940832
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||| ||||| ||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||| ||||||    
T  41940751 aatagcatagaattctgaatcacaatggtccagagacgatagagtttgcactagagtagttgagtcggactcgaagacaacc 41940832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8388259 - 8388105
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc--- 97  Q
    ||||| ||||||||| |||||||||||| |   ||||||||| |||||||||| ||||| ||||||||||| ||| |||||| | ||| || |||||       
T  8388259 aatagcataaaattctgaatcaccatggcctggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttccca 8388160  T
Q  98 ------aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          ||||||| ||| ||||||||||| ||  | |||||||||||||||||||    
T  8388159 accgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtca 8388105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 34652278 - 34652365
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttca 98  Q
    ||||| |||||||||||| ||| ||||| |||||||||||||| |||||  ||||||| || ||| |||||| ||||| || ||||||    
T  34652278 aattctgaatcaccatggcccagagacggtagagcttgcactagagtagtcgagtcgggctcgaagacaacccgatcccatctgttca 34652365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27292607 - 27292526
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||| ||||||||||| |   ||||||||||| |||||||| || |||||||||| ||| ||| ||||||    
T  27292607 aatagcataaaattccaaatcaccatggcctggagacgatagagtttgcactagagcagatgagtcgaactcgaagacaacc 27292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 4268166 - 4268118
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    |||||||||||||| |||||||||||  | |||||||||||||||||||    
T  4268166 aagtgaagggcctctagtaaggctactgcctccccctccaaaactgtca 4268118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 11375537 - 11375681
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc---------aagt 101  Q
    |||||||||||||||||| ||  |||||||||||||||||||| | ||||||| || ||||  || |||||| | ||| |||| ||          || |    
T  11375537 aattccgaatcaccatggaccggagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaat 11375636  T
Q  102 gaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||||||||||||||||||    |||||||||||||||||||    
T  11375637 gaagggcctcgagtaaggctactgtctccccctccaaaactgtca 11375681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 12660479 - 12660419
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    ||||| |||||||| ||| || ||||||||||||||||||||| ||||| |||||| ||||    
T  12660479 aattctgaatcaccgtggcccgaagacgatagagcttgcactagagtagctgagtcagact 12660419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 20205112 - 20205048
Alignment:
Q  17 gaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    |||||||||||  ||  ||| |||||||||||||||| ||||||||||||||||| ||| |||||    
T  20205112 gaatcaccatgacccggagaggatagagcttgcactagagtagatgagtcggactcgaagacaac 20205048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30222852 - 30222917
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtc 66  Q
    ||||| ||| |||||||||||||| ||  || |||||||||| |||||||||| ||||| ||||||    
T  30222852 aatagcatagaattccgaatcaccgtgacccgaagacgatagcgcttgcactagagtagctgagtc 30222917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 20205022 - 20204974
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||| ||||||||||||||||||  | ||||||||||| |||||||    
T  20205022 aagtgaatggcctcgagtaaggctactgcctccccctccaatactgtca 20204974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 53497205 - 53497050
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgtt---- 96  Q
    ||||| ||| |||||||||||||||||| ||  |||||||||||||||||| | ||||||||||||||||| ||| |||||| | ||| || ||||        
T  53497205 aatagcatagaattccgaatcaccatggcccggagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagca 53497106  T
Q  97 -----caagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtcac 147  Q
          |||||||||||||| |||||||||||  | |||||||| |||||||||||    
T  53497105 tcagcaaagtgaagggcctctagtaaggctactgcctccccctcaaaaactgtcac 53497050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27608917 - 27608998
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||||||||||||||| ||  ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||    
T  27608917 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 27608998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34497386 - 34497467
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||||||||||||||| ||  ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||    
T  34497386 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 34497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 55199684 - 55199603
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||||||||||||||  ||  ||||||||| |||||||| | ||||| ||||||||||||||| ||||||    
T  55199684 aatagcataaaattccgaatcaccatgacccgtagacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacc 55199603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 647187 - 647247
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    |||||||||||||||||| ||  |||||||||||||||||||| |||||||||||| ||||    
T  647187 aattccgaatcaccatggcccggagacgatagagcttgcactagagtagatgagtcagact 647247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 7640662 - 7640587
Alignment:
Q  144 tcaccttcatttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatagtgttgcaagcacttctcat 219  Q
    ||||||| ||| |||| ||||||||||| ||| ||||| ||||||||||||||| |||||| | |||||| |||||    
T  7640662 tcaccttgattgaaaccaataaggaagtgagtgtttgtgagagtgttgaaaagagagtgttactagcactactcat 7640587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 24176933 - 24176862
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    |||||||||||||||||  ||| |||||||||||||||||||| ||||| || ||| |||| ||| ||||||    
T  24176933 aattccgaatcaccatgacccagagacgatagagcttgcactagagtagttgtgtcagactcgaagacaacc 24176862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 2615646 - 2615588
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcgga 69  Q
    ||||| ||||||||||||  |||||||||||||||| |||||| ||||| |||||||||    
T  2615646 aattctgaatcaccatggcacaaagacgatagagctcgcactagagtagttgagtcgga 2615588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 42340291 - 42340371
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    ||||| ||| ||||| |||||||||||| ||  |||||| ||||||||||||| ||||| |||||| |||| ||| |||||    
T  42340291 aatagcatagaattctgaatcaccatggcccggagacgacagagcttgcactaaagtagctgagtctgactcgaagacaac 42340371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19117734 - 19117784
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcac 51  Q
    ||||| |||||||||||||||||||||| ||  ||||||||| ||||||||    
T  19117734 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcac 19117784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 46007472 - 46007402
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    ||||| ||||||||||||||| |||||| ||  |||||||| || |||||||| ||||| ||| |||||||    
T  46007472 aatagcataaaattccgaatcgccatggcccggagacgatatagtttgcactagagtagttgaatcggact 46007402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 48227550 - 48227517
Alignment:
Q  38 gatagagcttgcactatagtagatgagtcggact 71  Q
    |||||||||||||||| |||||||||||||||||    
T  48227550 gatagagcttgcactagagtagatgagtcggact 48227517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 44527426 - 44527272
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgtt---- 96  Q
    ||||| ||| |||||||||||||||||| ||  ||| |||||||||||||| | ||||||||||||||||| ||| |||||| | ||| || ||||        
T  44527426 aatagcatagaattccgaatcaccatggcccggagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagca 44527327  T
Q  97 -----caagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
          |||||||||||||| |||||||||||  | |||||||||||||||||||    
T  44527326 tcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaactgtca 44527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51113488 - 51113407
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||| ||||||||||||||| ||| ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||    
T  51113488 aatagcataaaactccgaatcaccatggcccagagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 51113407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2885396 - 2885315
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| ||| || ||||||||||||| | || ||||||||||||||||||||| ||||| |||||| |||| ||| ||||||    
T  2885396 aatagcatataactccgaatcaccatagcccgaagacgatagagcttgcactagagtagctgagtctgactcgaagacaacc 2885315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48949738 - 48949819
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||||||||||||||| ||  ||||||||| |||||||||| ||||| ||||| | ||| ||| ||||||    
T  48949738 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacc 48949819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 21031316 - 21031252
Alignment:
Q  7 ataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggact 71  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||| | ||| |||||| ||||    
T  21031316 ataaaattccgaatcaccatagtccggagacgatagagcttgcactagaatagctgagtcagact 21031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5609512 - 5609426
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatc 87  Q
    ||||| ||| ||||| |||||||||||  ||  ||||||||||| |||||||| ||||||||||||| ||| ||| |||||| ||||    
T  5609512 aatagcatagaattctgaatcaccatgaccctgagacgatagagtttgcactagagtagatgagtcgaactcgaagacaacccgatc 5609426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 52109616 - 52109564
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatga 63  Q
    |||||||||||||||||||||  |||| |||||||||| |||| |||||||||    
T  52109616 aattccgaatcaccatggtccggagacaatagagcttgtactagagtagatga 52109564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4395331 - 4395248
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctg 84  Q
    ||||| ||| ||||| |||||||||||  |   |||||||||||||||||||| ||||||||||| ||||| ||| | ||||||    
T  4395331 aataggatagaattctgaatcaccatgaccttgagacgatagagcttgcactagagtagatgagttggactcgaagataacctg 4395248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 48166410 - 48166313
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttca 98  Q
    ||||| ||| ||||| | |||||||| |||| ||||| |||||||||||| || ||||| ||| || |||| ||| |||||| ||||| |||| ||||    
T  48166410 aatagcatagaattctgtatcaccatcgtcccaagactatagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattca 48166313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 18157159 - 18157211
Alignment:
Q  154 ttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatagtgttgc 206  Q
    |||||| ||||||||||| ||||||||  ||| ||||||||||| ||||||||    
T  18157159 ttaaaccaataaggaagtgagtatttgagagaatgttgaaaagagagtgttgc 18157211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 15606024 - 15606162
Alignment:
Q  17 gaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc---------aagtgaaggg 107  Q
    |||||||||||  | | |||||||||||||||||||| ||||| ||||||||||||||| |||||| | ||| || |||||         ||||||| ||    
T  15606024 gaatcaccatgacctagagacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatgg 15606123  T
Q  108 cctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    | ||||||||||||||  | |||||||||||||||||||    
T  15606124 catcgagtaaggctactgcctccccctccaaaactgtca 15606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 29368070 - 29368148
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaaca 79  Q
    ||||| ||| |||| |||||||| |||  ||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  29368070 aatagcatagaattacgaatcactatgacccggagacgatagagcttgcactatagtagatgagtcggactcgaaaaca 29368148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 15053199 - 15053271
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacct 83  Q
    |||||||||||||||||| || |||||||||| | |||||||| ||||| ||||||||||| ||| |||||||    
T  15053199 aattccgaatcaccatggcccgaagacgatagcgtttgcactagagtagctgagtcggactcgaagacaacct 15053271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 11731696 - 11731779
Alignment:
Q  14 tccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcctatatgttc 97  Q
    |||||| |||||||| ||  |||| ||||||||||||||||| |  | |||||||||| ||| |||||||| ||||||||||||    
T  11731696 tccgaaccaccatggcccggagacaatagagcttgcactatattgaaagagtcggactcgaagacaacctgttcctatatgttc 11731779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34104479 - 34104542
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgag 64  Q
    ||||| ||||||||| |||||||||||||||  ||||||||| |||||||||| ||||| ||||    
T  34104479 aatagcataaaattctgaatcaccatggtccggagacgatagcgcttgcactagagtagctgag 34104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 14680228 - 14680181
Alignment:
Q  99 agtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    |||||||||||||||||||||||||  | ||||||||||| |||||||    
T  14680228 agtgaagggcctcgagtaaggctactgcctccccctccaatactgtca 14680181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 19690903 - 19690973
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    |||||| ||||||||||   || |||||||||||||||||||| ||||| |||||| |||| ||| |||||    
T  19690903 aattccaaatcaccatgactcagagacgatagagcttgcactaaagtagctgagtcagactcgaagacaac 19690973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 29610352 - 29610406
Alignment:
Q  149 ttcatttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatagtgt 203  Q
    |||||||||||||||||| |||| ||| ||||  ||||||||||||||| |||||    
T  29610352 ttcatttaaactaataagcaagtgagtgtttgagagagtgttgaaaagagagtgt 29610406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 28107302 - 28107225
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgatcc 88  Q
    ||||| |||||||||||| ||  |||||||||||||||||||| |||||  ||||  |||| ||| ||||| ||||||    
T  28107302 aattctgaatcaccatggcccggagacgatagagcttgcactagagtagcggagttagactcgaagacaacgtgatcc 28107225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 29368176 - 29368224
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    |||||||||||||||||||||| ||   | |||||||||||||||||||    
T  29368176 aagtgaagggcctcgagtaaggatattgcctccccctccaaaactgtca 29368224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23854105 - 23854025
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    ||||| ||| ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  23854105 aatagcatagaattctgaatcaccatggcccggagacgatagagcttgcactagagttgatgagtcggactcgaagacaac 23854025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 33642788 - 33642863
Alignment:
Q  11 aattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacctgat 86  Q
    ||||| |||||||||||| ||  |||||| |||||||||| || ||||||||||| ||||||||| ||||||||||    
T  33642788 aattctgaatcaccatggcccggagacgacagagcttgcattagagtagatgagttggacttgaagacaacctgat 33642863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 8451143 - 8451218
Alignment:
Q  7 ataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    |||||||||||||||||||||  |   |||||||| ||||||||||| |||||||||||| |||| ||| ||||||    
T  8451143 ataaaattccgaatcaccatgacctggagacgataaagcttgcactaaagtagatgagtcagactcgaagacaacc 8451218  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 13415086 - 13415042
Alignment:
Q  102 gaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||||||||||||||||||  | |||||||||||||||||||    
T  13415086 gaagggcctcgagtaaggctactgcctccccctccaaaactgtca 13415042  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 185605 - 185663
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtag 59  Q
    ||||| ||| ||||| |||||||||||||||  |||||| ||||||||||||| |||||    
T  185605 aatagcatagaattctgaatcaccatggtccggagacgaaagagcttgcactaaagtag 185663  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 598266 - 598332
Alignment:
Q  16 cgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||||||||||  |  ||||||||||||||||||||| ||||| | |||| |||||||| ||||||    
T  598266 cgaatcaccatgacctgaagacgatagagcttgcactagagtagctaagtccgacttgaagacaacc 598332  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 478176 - 478224
Alignment:
Q  98 aagtgaagggcctcgagtaaggctaccacttccccctccaaaactgtca 146  Q
    ||||||| ||| ||||||||||||||  | |||||||||||||||||||    
T  478176 aagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtca 478224  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3606753 - 3606833
Alignment:
Q  1 aatagaataaaattccgaatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaac 81  Q
    ||||| ||| |||||| | ||||||||  ||  ||||||||||| ||| |||| ||| | |||||||||||||||||||||    
T  3606753 aatagcatagaattccaagtcaccatgaccctgagacgatagagtttgtactaaagttgttgagtcggacttgaaaacaac 3606833  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 296950 - 297023
Alignment:
Q  145 caccttcatttaaactaataaggaagtaagtatttgtaagagtgttgaaaagatagtgttgcaagcacttctca 218  Q
    ||||||||||||||| ||||| ||||| ||| ||||  ||||||||||||||| |||||||| |||||| ||||    
T  296950 caccttcatttaaaccaataatgaagtgagtgtttgagagagtgttgaaaagagagtgttgctagcactactca 297023  T

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Target: scaffold0922 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 315 - 354
Alignment:
Q  38 gatagagcttgcactatagtagatgagtcggacttgaaaa 77  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  315 gatagagcttgcactagagtagatgagtcggactcgaaaa 354  T

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Target: scaffold0446 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 363 - 278
Alignment:
Q  1 aatagaataaaattccg----aatcaccatggtccaaagacgatagagcttgcactatagtagatgagtcggacttgaaaacaacc 82  Q
    ||||| |||||||||||    |||||||||||||   ||| ||||| |||||||||| ||||| ||||||||||| ||| ||||||    
T  363 aatagcataaaattccgaattaatcaccatggtctggagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 278  T

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