View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_25 (Length: 343)
Name: NF15642_low_25
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 2687859 - 2688180
Alignment:
| Q |
5 |
gcaaacacaagtttgcctcaaccgaaaatgatacaacaaaacaagcaccagaatacaaaaccaaacagcaaggcaaatgctatgggtctgaaatctaata |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2687859 |
gcaaacacaagtttgcctcaaccgaaaatgatacaacaaaacaagcaccagaatacaaaaccaaacagcaaggcaaatgctatgggtctgaaatctaata |
2687958 |
T |
|
| Q |
105 |
aatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatctcccaaaaccgaacagcggctccagaagccaaaaaac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2687959 |
aatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatctcccaaaaccaaacagcagctccagaagccaaaaaac |
2688058 |
T |
|
| Q |
205 |
caacaatcagctgcgcagcagacaggcagcaccacctacacctgctgtactgtcatgatagcaacactaaacccagcaaaaatgccagcccccagccgaa |
304 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2688059 |
caacaatcagctgcgcagcagacaggcagcagcacctacacctgctgtactgtcatgacagcaacactaaacccagcaaaaatgccagcccgcagccgaa |
2688158 |
T |
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| Q |
305 |
acacaatgaaaccggaagatag |
326 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2688159 |
acacaatgaaaccggaagatag |
2688180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 52421986 - 52422091
Alignment:
| Q |
69 |
acagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatct |
168 |
Q |
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| T |
52421986 |
acagcaaggcaacagctatgggtctgaaatctaataaaactaaccaaaattcaagcccctagctatgcctaaaccaacccgcaacagccccatcacagct |
52422085 |
T |
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| Q |
169 |
cccaaa |
174 |
Q |
| |
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|||||| |
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| T |
52422086 |
cccaaa |
52422091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 42851708 - 42851821
Alignment:
| Q |
61 |
aaaaccaaacagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtccca |
160 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||||||| |||||| || |||||||||||||| ||||| |||| |
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| T |
42851708 |
aaaaccaatcagcaaggcaacaactatgggtctgaaatctaataaaactaaccaaaattcaagctcctagctatgcctaaaccaacccgcaacagcccca |
42851807 |
T |
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| Q |
161 |
gcacatctcccaaa |
174 |
Q |
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|||| |||||||| |
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| T |
42851808 |
tcacagctcccaaa |
42851821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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