View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_30 (Length: 330)
Name: NF15642_low_30
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 38930312 - 38930619
Alignment:
| Q |
1 |
cacagttacaactgaactttcataccagccgacatatatttttcccttattggcatttgaaggtctaccatctcctgatatggtgaatccagatggaaga |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38930312 |
cacagttacaactgaactttcataccagccgccatatatttttcccttattgtcaattgaaggtctaccatctcctgatatggggaatccagatggaaga |
38930411 |
T |
|
| Q |
101 |
agaggcaataatgaacaatcttctccacgtattgcacaattcattatttctgcatcaattagacannnnnnnnnnnnnnnnngacacacacaccaaccca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | | | ||||||||| |
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| T |
38930412 |
agaggcaataatgaacaatcttctccacgtattgcacaattcattttttctgcatcaattagacaatat--------------atatatataccaaccca |
38930497 |
T |
|
| Q |
201 |
aattccatataatgtgtataccattcttgtagaattctctgatcactgttatcttcaggatttaatgtctacatcacataaacaattgagatgaatatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38930498 |
aattccatataatgtgtataccattcttgtagaattctctgatcactgttatcttcaggatttaatgtctacatcacataaacaattgagatgaatatag |
38930597 |
T |
|
| Q |
301 |
tcatatttacttcaagaataat |
322 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
38930598 |
tcttatttacttcaagaataat |
38930619 |
T |
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