View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_31 (Length: 317)
Name: NF15642_low_31
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 34910492 - 34910791
Alignment:
| Q |
1 |
acattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtttgcaaatccttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910492 |
acattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtacattcagagtaagcaaagctagaccagttggtttgcaaatccttcg |
34910591 |
T |
|
| Q |
101 |
taaaaacaaaatcttcctaaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactttaaaatattgtgcttctcacacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910592 |
taaaaacaaaatcttcctaaaagcattagctaagcactacaaataatctatgtgtatgaaaactcgtatttcactttaaaatattgtgcttctcacacat |
34910691 |
T |
|
| Q |
201 |
cacatggtgctaccaataaactggtttcaaagaagacaatttactaagagcaagaaaattaataaaatggaaaaatatcaaaatttccaatagaaagatt |
300 |
Q |
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| T |
34910692 |
cacatggtgctaccaataaactggtttcaaagaagacaatttactaagagcaagaaaattaataaaatggaaaaatatcaaaatttccaatagaaagatt |
34910791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 28543072 - 28542936
Alignment:
| Q |
2 |
cattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtttgcaaatccttcgt |
101 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || || ||||||||||||||| | |
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| T |
28543072 |
cattaattcacatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctaga-caatttgtttgcaaatccttcat |
28542974 |
T |
|
| Q |
102 |
aaaaacaaaatcttcctaaaagcattagctaagcacta |
139 |
Q |
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| T |
28542973 |
aaaaacaaaatcttcctaaaagcattagctaagtacta |
28542936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 296
Target Start/End: Complemental strand, 28542925 - 28542797
Alignment:
| Q |
177 |
taaaatattgtgcttctcacacatcacatggtgctaccaataaactggtttcaaag---------aagacaatttactaagagcaagaaaattaataaaa |
267 |
Q |
| |
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|||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||| ||| | |||||||||| ||||||||||| |
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| T |
28542925 |
taaactattgtgcttctcacaaatcacctggcactaccaataaactggtttcaaaggcttccatgaagacagtttgccaagagcaagacaattaataaaa |
28542826 |
T |
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| Q |
268 |
tggaaaaatatcaaaatttccaatagaaa |
296 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
28542825 |
tgggaaaatatcaaaatttccaatagaaa |
28542797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 34905400 - 34905519
Alignment:
| Q |
118 |
taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt---taaaatattgtgcttctcacacatcacatggtgctacc |
214 |
Q |
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|||||| ||| ||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
34905400 |
taaaagaattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactacc |
34905499 |
T |
|
| Q |
215 |
---aataaactggtttcaaa |
231 |
Q |
| |
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||||||||||||||||| |
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| T |
34905500 |
aataataaactggtttcaaa |
34905519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 34905307 - 34905373
Alignment:
| Q |
8 |
ttcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct |
74 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||| |
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| T |
34905307 |
ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagct |
34905373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 34896848 - 34896937
Alignment:
| Q |
118 |
taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt-taaaatattgtgcttctcacacatcacatg |
206 |
Q |
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|||||||||| ||||||||||||||| ||| ||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||| |
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| T |
34896848 |
taaaagcattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcgcttctttaatattgtgcttctcacacatcacatg |
34896937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 34896753 - 34896821
Alignment:
| Q |
6 |
aattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct |
74 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| | ||||||||| |
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| T |
34896753 |
aattcacatgaaatcttcattagaaaagaaagaaaatatgataataataaattcagatttagcaaagct |
34896821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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