View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_33 (Length: 314)
Name: NF15642_low_33
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 6971020 - 6971333
Alignment:
| Q |
1 |
attcataactggaattatcgtttctactccaaagtttatccaagtcttctattgttacacatgaaaaccaagttgattttcttttgtaaaccagaaattc |
100 |
Q |
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| T |
6971020 |
attcataactggaattatcgtttctactccaaagtttatccaagtcttctattgttacacatgaaaaccaagttgatttttttttgtaaaccagaaattc |
6971119 |
T |
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| Q |
101 |
tgcacgcccaactggaagagacccgaaccatcttatccagctgctcttgggtaaacaaagttgatttgaatgacataaatgtgaactcctactgaatcga |
200 |
Q |
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| T |
6971120 |
tgcacgcccaactggaagagacccgaaccatcttatccagctgctcttgggtaaacaaagttgatttgaatgacataaatgtgaactcctactgaatcga |
6971219 |
T |
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| Q |
201 |
aaagagcaatgctaaagagtatgaatgtttgtttccacaaatcataaaaaggctgatgtgttttgcattttaagaatcaaaaactggttgctcacagaca |
300 |
Q |
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| T |
6971220 |
aaagagcaatgctaaagagtatgaatgtttgtttccacaaatcataaaaaggctgatgtgttttgcattttaagaatcaaaaactggttgctcacagaca |
6971319 |
T |
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| Q |
301 |
cgggatgaatagct |
314 |
Q |
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| T |
6971320 |
cgggatgaatagct |
6971333 |
T |
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