View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_44 (Length: 262)
Name: NF15642_low_44
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 29304071 - 29303835
Alignment:
| Q |
6 |
aagatcgtgaaagatttattgagccaccctttattgggccacactctacatgtacatgtacatgcacttatgagcgtgatgagagtgttgagttccaaat |
105 |
Q |
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| T |
29304071 |
aagatcgtgaaagatttattgagtcaccctttattggaccacactctacatgtacatg------cacttatgagcgtgatgagagtgttgagttccaaat |
29303978 |
T |
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| Q |
106 |
taactaagatataaaatgaaaatatatttgtaggaatttttcaccttacaagtttannnnnnnatgattaaattagattcgacacaaattctaatgggta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29303977 |
taactaagatataaaatgaaaatatatttgtaggaatttttcaccttacaagtttatttttttatgattaaattagattcgacacaaattctaatgggta |
29303878 |
T |
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| Q |
206 |
ttatagatgaaatgccaaaaataaaatatttaccacagtttgt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303877 |
ttatagatgaaatgccaaaaataaaatatttaccacagtttgt |
29303835 |
T |
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