View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15642_low_5 (Length: 708)
Name: NF15642_low_5
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 10 - 690
Target Start/End: Original strand, 21853428 - 21854106
Alignment:
| Q |
10 |
acatcatcatgcttcggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21853428 |
acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc |
21853527 |
T |
|
| Q |
110 |
tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21853528 |
tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc |
21853627 |
T |
|
| Q |
210 |
acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21853628 |
acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata |
21853727 |
T |
|
| Q |
310 |
aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacataaatgtgtctggtgcc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21853728 |
aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacataaatgtgtctggtgcc |
21853827 |
T |
|
| Q |
410 |
tttaatcgattcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagatannnnnnncctc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21853828 |
tttaatcgattcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagatagggggt--ctc |
21853925 |
T |
|
| Q |
510 |
cctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagttgca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21853926 |
cctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagttgca |
21854025 |
T |
|
| Q |
610 |
gaaggtattattgaaaccaaaagatttaagcactctcattaaaaaagaccattctaaagtgtcaaatgcctttgttatatc |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21854026 |
gaaggtattattgaaaccaaaagatttaagcactctcattaaaaaagaccattctaaagtgtcaaatgcctttgttatatc |
21854106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 16011837 - 16011931
Alignment:
| Q |
507 |
ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatc |
601 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| || ||||| || |||||| | || | ||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
16011837 |
ctccctgtctcactccccttgtgcaattgaaataaccttgtgccttaccatttacagagacagataagaaagctgaattaagaataacttgaatc |
16011931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 10 - 690
Target Start/End: Original strand, 32248668 - 32249345
Alignment:
| Q |
10 |
acatcatcatgcttcggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc |
109 |
Q |
| |
|
|||||||||||||| | || ||||| || | ||||| | ||| || ||||| |||||||| ||||||||||||| | |||| |||| ||||| || || |
|
|
| T |
32248668 |
acatcatcatgctttgaattactgatcttatcaattgaactctacctgccattgagagcaatgaagctttccaagttgaaagcttcacgcaaatcttgtc |
32248767 |
T |
|
| Q |
110 |
tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc |
209 |
Q |
| |
|
| |||||||||| | ||||||||||||||| |||| ||||| | || | ||||| || || |||| ||||| ||||||||||| | || ||| |
|
|
| T |
32248768 |
tacaactggttgaaaatgagaagcttttggttttcctttgaaaatgagcacctccaagtaattgaaggggagggtgcctatgttgaaattcaggaactgc |
32248867 |
T |
|
| Q |
210 |
acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata |
309 |
Q |
| |
|
|| | ||||| | |||| | |||||||||||||||| || || || |||||||||||||| || ||||| |||||||| ||||||||| ||||||| | |
|
|
| T |
32248868 |
actgttctattcattctaatatttgaaatagagttggagtatatggttgactttgaacagtttatcacttggccagaattcagggcatatttatgaaaca |
32248967 |
T |
|
| Q |
310 |
aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacataaatgtgtctggtgcc |
409 |
Q |
| |
|
||||||| || ||||| | || |||| ||||||||||||||| |||||||||||||| | ||||||||| || | ||||| ||||| |||||||| |
|
|
| T |
32248968 |
aatctttaaggttgtttaatcctgacattttacctttgcagaaaatcataagatcatctgcataaaatgtgtggcagggaactgggatgtgcctggtgcc |
32249067 |
T |
|
| Q |
410 |
tttaatcgattcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagatannnnnnncctc |
509 |
Q |
| |
|
||| || |||||||| ||||||| || || || | ||||||||| |||| |||||| ||| |||||||||| || |||||||||| ||| |
|
|
| T |
32249068 |
tttgataagatcaagctttccttcttctaccagctttgtaatgcttctacttaaaacatcttcagccaaacaaaagagtagaggagatagggggt--ctc |
32249165 |
T |
|
| Q |
510 |
cctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagttgca |
609 |
Q |
| |
|
|||| |||| |||||| ||||| || ||||| || |||||||| ||||| |||||| ||| |||||||||||||||||||| || |||||| | ||||| |
|
|
| T |
32249166 |
cctgcctca-ccccctagtgcagttaaaataaccttgtgcttttccattgactgatacagatagaaaagctgaattgagaattacctgaatccaattgca |
32249264 |
T |
|
| Q |
610 |
gaaggtattattgaaaccaaaagatttaagcactctcattaaaaaagaccattctaaagtgtcaaatgcctttgttatatc |
690 |
Q |
| |
|
||| | | || ||| ||||| | ||| || ||| ||| |||||| | |||||| | |||||||||||| |||| ||||| |
|
|
| T |
32249265 |
aaagatgtcatggaagccaaatgttttgagaactttcaataaaaatggccattccagggtgtcaaatgccattgtaatatc |
32249345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 38620849 - 38620785
Alignment:
| Q |
434 |
ttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagata |
498 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
38620849 |
ttccacaagtttagagatatttctgcttagaacatcctctgccaaacaaaagaggagaggagata |
38620785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 632
Target Start/End: Original strand, 17629956 - 17630081
Alignment:
| Q |
507 |
ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagtt |
606 |
Q |
| |
|
|||||||||||||||| || || || |||||||| || |||||||| ||||| | || || |||||| | || || || | ||| |||| |||| |||| |
|
|
| T |
17629956 |
ctccctgtctcacccctctagtacagttgaaataaccttgtgcttttccattgacagaaattgaaagatatgcagactttaaaataacttcaatccagtt |
17630055 |
T |
|
| Q |
607 |
gcagaaggtattattgaaaccaaaag |
632 |
Q |
| |
|
||||||||| | ||| |||||||||| |
|
|
| T |
17630056 |
gcagaaggtttcattaaaaccaaaag |
17630081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 632
Target Start/End: Complemental strand, 30219933 - 30219808
Alignment:
| Q |
507 |
ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagtt |
606 |
Q |
| |
|
|||||||||||||||| || || || |||||||| || |||||||| ||||| | || || |||||| | || || || | ||| |||| |||| |||| |
|
|
| T |
30219933 |
ctccctgtctcacccctctagtacagttgaaataaccttgtgcttttccattgacagaaattgaaagatatgcagactttaaaataacttcaatccagtt |
30219834 |
T |
|
| Q |
607 |
gcagaaggtattattgaaaccaaaag |
632 |
Q |
| |
|
||||||||| | ||| |||||||||| |
|
|
| T |
30219833 |
gcagaaggtttcattaaaaccaaaag |
30219808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 632
Target Start/End: Complemental strand, 32020331 - 32020206
Alignment:
| Q |
507 |
ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagtt |
606 |
Q |
| |
|
|||||||||||||||| || || || |||||||| || |||||||| ||||| | || || |||||| | || || || | ||| |||| |||| |||| |
|
|
| T |
32020331 |
ctccctgtctcacccctctagtacagttgaaataaccttgtgcttttccattgacagaaattgaaagatatgcagactttaaaataacttcaatccagtt |
32020232 |
T |
|
| Q |
607 |
gcagaaggtattattgaaaccaaaag |
632 |
Q |
| |
|
||||||||| | ||| |||||||||| |
|
|
| T |
32020231 |
gcagaaggtttcattaaaaccaaaag |
32020206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 14776998 - 14777074
Alignment:
| Q |
420 |
tcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggaga |
496 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| | ||||||| ||||||||| | | ||||||||||||||||| |
|
|
| T |
14776998 |
tcaagcttgccttgatccacaagtttagaaatgttcctgcttaagacatcctcagcaatgcaaaaaagaagaggaga |
14777074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University