View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_52 (Length: 221)
Name: NF15642_low_52
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 9721261 - 9721331
Alignment:
| Q |
147 |
ccctaatttcttccttaagaatcaaactcccatgtttcccactttcataaccaaaggaatcacaacactct |
217 |
Q |
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| T |
9721261 |
ccctaatttcttccttaagaatcaaactcccaagtttcccactttcataaccaaaggaatcacaacactct |
9721331 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 9721127 - 9721190
Alignment:
| Q |
13 |
attcttgtcactacctataatgccaccaacaaccacattatcattatccttatcaacagaagat |
76 |
Q |
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| T |
9721127 |
attcttgtcactacctataatgccaccaacaaccacattatcattatccttatcaacagaagat |
9721190 |
T |
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