View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_53 (Length: 215)
Name: NF15642_low_53
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 48400254 - 48400068
Alignment:
| Q |
18 |
cttattttcttaataaagtgtcatttagtcaaacaaactctgaaaaaaccaacatatataaatcaccacttcgcttctaaaacctcatttagttaacatt |
117 |
Q |
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| T |
48400254 |
cttattttcttaataaagtgtcatttagtcaaacaaactctaaaaaaaccaacatatataaatcaccacttcgcttctaaaacctcatttagttaacatt |
48400155 |
T |
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| Q |
118 |
aatatacnnnnnnnggtaaaagaatacattaatatac-nnnnnnnnnatggaatagtctatttatttcgctaatattgacctatgct |
203 |
Q |
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| T |
48400154 |
aatatactttttttagtaaaagaatacattaatatacttttttttttatggaatggtctatttatttcgctaatattgacctatgct |
48400068 |
T |
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