View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_6 (Length: 706)
Name: NF15642_low_6
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 14037831 - 14038327
Alignment:
| Q |
17 |
catggaggaaaatgggttacacaagcgtcaaactcattcgcttcgtccattacaagtgtgtacgcttatttttctcgtcacttttacgtttcatttcata |
116 |
Q |
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| T |
14037831 |
catggaggaaaatgggctatccaagcgtcaaactcattcgcttcgtccattacaagtgtgtacgcttatttttctcgtcacttt-acgtttcatttcata |
14037929 |
T |
|
| Q |
117 |
attttgttatttatatcatttaacttatgatcgagaaaagtctctctgatacatgttaaatgatatcaatagatgtctcaattatagtcttatataaata |
216 |
Q |
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| T |
14037930 |
attttgctattgatatcatttaacttattagtgaggaaagtctctctgatacacgttaaatgatatcaatagatgtctcaattatagtcttatataaata |
14038029 |
T |
|
| Q |
217 |
taaattttgaagtatttatttacaaaattactttgttagggtgactacaaacattggctagtggaacagattgggctgcctccattggaagattggaggg |
316 |
Q |
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| T |
14038030 |
taaattttgaagtatttatttacaaaattactttgttagggtgactacaaacattggctagtggaacagattgggctgcctccattggaagattggaggg |
14038129 |
T |
|
| Q |
317 |
acaatatgttgatggattgtttgaagaattcaattgaaatgaacgaaatgtttagagatgaatgggatgatgattattgggatgctatcatacagagtgg |
416 |
Q |
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| T |
14038130 |
acaatatgttgatggagtgtttgaagaattcaattgaaatgaacgaaatgtttagagatgaatgggatgataattattgggatgctatcatacagagtgg |
14038229 |
T |
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| Q |
417 |
atcagcttcttaacaagcaaaagcattgaatgttcca--nnnnnnnnnngagggaacattgaatgttccatgttgattgttaaattggggtgtctcaa |
512 |
Q |
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| T |
14038230 |
atcagcttcttaacaagcaaaaacattgaatgttccattttttttttttgagggaacattgaatgttccatgttgattgttaaattggtgtgtctcaa |
14038327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 512 - 702
Target Start/End: Original strand, 14038352 - 14038542
Alignment:
| Q |
512 |
atttattattttatttaaataacaatatatgatcaactagtgtgaaaaataacaatgatggaataacttgttttctctaccaggaacctccgagatcnnn |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14038352 |
atttattattttatttaaataacaatatatgatcaactagtgtgaaaaataacaatgatggaataacttgttttctctaccaggaacctccgagatcaaa |
14038451 |
T |
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| Q |
612 |
nnnnnnnnnnnnnnnncctcttgatcgcgaagatgaaccccgtgttccttccgcgacaaagttaatggttctaaacccccgcctcctatgc |
702 |
Q |
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| T |
14038452 |
aaaaaaaaaaaaaaaacctcttgatcgcgaagatgaaccccgtgttccttccgcgacaaagttaatggttctaaacccccgcctcctatgc |
14038542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 229 - 429
Target Start/End: Complemental strand, 14042986 - 14042786
Alignment:
| Q |
229 |
tatttatttacaaaattactttgttagggtgactacaaacattggctagtggaacagattgggctgcctccattggaagattggagggacaatatgttga |
328 |
Q |
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| T |
14042986 |
tatttacttataaaattactctgtcaggctgactacaaacaatggctagcagcacagattgggttgcctccgttagaagattggagggacaatatgttga |
14042887 |
T |
|
| Q |
329 |
tggattgtttgaagaattcaattgaaatgaacgaaatgtttagagatgaatgggatgatgattattgggatgctatcatacagagtggatcagcttctta |
428 |
Q |
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| T |
14042886 |
tggagtgttttaagaaggtgatcgaaatgaatgaaatgtatagagatgaatgggatgataactattgggataccatcattgagaatggatcagcttctta |
14042787 |
T |
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| Q |
429 |
a |
429 |
Q |
| |
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| T |
14042786 |
a |
14042786 |
T |
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